Scophthalmus maximus (turbot): 118299542
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Entry
118299542 CDS
T09850
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03030
DNA replication
smau03420
Nucleotide excision repair
smau03430
Mismatch repair
smau03440
Homologous recombination
smau03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118299542 (rpa1)
03420 Nucleotide excision repair
118299542 (rpa1)
03430 Mismatch repair
118299542 (rpa1)
03440 Homologous recombination
118299542 (rpa1)
03460 Fanconi anemia pathway
118299542 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smau03000
]
118299542 (rpa1)
03032 DNA replication proteins [BR:
smau03032
]
118299542 (rpa1)
03400 DNA repair and recombination proteins [BR:
smau03400
]
118299542 (rpa1)
Transcription factors [BR:
smau03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118299542 (rpa1)
DNA replication proteins [BR:
smau03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
118299542 (rpa1)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
118299542 (rpa1)
MMR (mismatch excision repair)
118299542 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
118299542 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8448
A_deaminase
P_C
Pox_vIL-18BP
Motif
Other DBs
NCBI-GeneID:
118299542
NCBI-ProteinID:
XP_035479247
LinkDB
All DBs
Position
11:10442200..10466814
Genome browser
AA seq
601 aa
AA seq
DB search
MTKLSEGAIEALSSGTGGNDAVLQLVNIRKIDGGNGPARFRVMMSDGRHTLSSFMLSTQL
NCIAEEGKLAPNCVCLLKRHVTNVLKDGRRVVIILEIDVIKPAEDVAGKIGDPTPYTEGQ
TKGPQSAPVPDNRPPLQHQNKNEAVNRGFNRDFGKKAPSAVPSTPGGSSKVVPIASLNPY
QSKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESSEIRVTGFNQEVDKFYSLIETGK
VYYISKGSLKIANKQYTAVKNDYEMTLNGESTVIPCEDSCDVPMVQCDFVSIGDLESREK
DAIIDVIGVCKSVDDVTRLTTKSNKEVSKRTLDLMDMSGKVVTVTLWGEEAEKFNGSGQP
ILAIKGAKLSDYGGRSLSASFSSTLMINPDIPEAYKLRGWYDQEGHAMDGQSLTELKGGS
GGGNTNWKALSDIKTEHLGHGDKADYYTCKATIVYLRKENCLYQACPSQDCNKKVVDQHN
GMFRCEKCDKEFPNFKYRLILSANIADHADNQWVTCFQESAEAILGQNAEYLGQLKESNE
TAFDEVFQQANFNTFVFRNRVKLETYNDESRIKATVMEVKPVDHKDYCKRLIINIRKHAS
Q
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctctccgagggcgcgatagaggctctgtcaagtggcaccggaggcaacgac
gcagtgcttcagttggtgaacattcgcaagattgatgggggaaacggtccggctcgcttt
cgggtgatgatgagcgatgggaggcacacgctgtcctccttcatgctctccacccagctg
aactgcatagcagaggaaggaaaactggccccaaactgcgtctgcttgctgaagaggcat
gtgaccaatgtgctaaaggatggacgacgagtggttatcattctggaaattgatgtcatc
aagcctgctgaagatgttgctgggaaaataggagaccccactccctacacagagggtcaa
acaaaaggcccacagtcggccccagtccctgataaccgccctccgctgcagcatcaaaat
aaaaatgaagcagtgaacagaggtttcaatagagactttgggaagaaggccccatctgct
gtgcccagtactccagggggcagctccaaagttgtacccattgccagcctcaacccttac
cagtccaagtggaccatccgtgctcgtgttaccaacaagagctccatccgaacatggagc
aactctcgcggtgatggcaaactcttctccatggagattgtggacgagagcagtgagata
cgagtgactggtttcaaccaagaggtggacaagttctacagcctgattgagactggcaag
gtctactacatctccaagggctccctgaagatcgccaacaaacagtacacagcagtgaag
aatgattatgagatgacgctaaatggggagtccacagtcatcccctgtgaggacagctgt
gatgttcccatggtgcagtgtgactttgtctctatcggcgacctggagagcagagagaag
gatgccatcatcgatgtgattggagtgtgcaaaagtgtggacgatgtgacccgccttaca
acaaagtccaacaaggaagtgtcgaaaaggacgctcgatctgatggacatgtctgggaag
gtggtgactgtcactctgtggggagaggaagcagaaaagttcaatggctctggacagccc
attctggccatcaagggggcaaagctgtcagactatggtggccggtccctctctgcatcc
ttcagcagcaccctgatgatcaacccagacatccctgaggcatataaactccgaggctgg
tatgaccaggagggccatgccatggacggacagtctctgacggagttgaaaggtggcagc
gggggagggaacaccaactggaaggctctgtccgacattaagaccgagcacctggggcat
ggagacaaggcagactactacacctgcaaagctaccattgtgtacctgcgcaaggaaaac
tgcctgtaccaggcctgcccgagccaagactgcaacaagaaagtggtagaccagcacaat
ggcatgttccgctgtgaaaagtgtgacaaagagttccccaacttcaagtaccgcctcatt
ctgtctgcaaacattgcagatcatgcggacaaccagtgggtgacttgcttccaggagagt
gcagaggccatcttgggccagaatgcagaataccttgggcagctcaaggaatcgaatgaa
actgccttcgatgaggtcttccaacaagccaacttcaacacgtttgtcttccgcaacaga
gtgaagctagaaacgtataacgatgaatccagaatcaaagccacagtgatggaggtgaag
ccagttgaccataaggactactgcaagaggttgatcataaacataaggaaacatgcttcc
cagtag
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integrated database retrieval system
