Scophthalmus maximus (turbot): 118299791
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Entry
118299791 CDS
T09850
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03022
Basal transcription factors
smau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118299791 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
118299791 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118299791 (ercc2)
03036 Chromosome and associated proteins [BR:
smau03036
]
118299791 (ercc2)
03400 DNA repair and recombination proteins [BR:
smau03400
]
118299791 (ercc2)
Enzymes [BR:
smau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118299791 (ercc2)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
118299791 (ercc2)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
118299791 (ercc2)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
118299791 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
118299791
NCBI-ProteinID:
XP_035479704
LinkDB
All DBs
Position
11:5439901..5449314
Genome browser
AA seq
760 aa
AA seq
DB search
MKINIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKETGESNNFLALALSSRKNLCIHPE
VSALRFGKEVDGKCHSLTASYIRAQRHSNADLPACSFYEEFDAVGRQVPLPAGVYNLDDL
KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELSKKSIVVFDEAHNID
NVCIDSMSVNITRRTLDNCHKNVDTLQNTIQKIKETDTAKLKEEYRRLVEGLKEANVARE
TDVYLANPVLPDEILREAVPGTIRTAEHFVGFLRRFLEYLKSRLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTVAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYVYMENIVAAWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHISDGSLNLTVDETVHLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLQSEEMLQKIAQIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaacatcgagggtctgttggtgtatttcccatatgactacatctatcctgag
cagtactcctacatgctggagctgaagaggacgctggacgccaaaggtcatggagtcttg
gagatgccttcaggaacagggaagaccatttctctgctgtctctcatcgttgcctaccaa
aaggcctttcctttggaagtgaccaagttaatatactgctccagaacagttcccgagatc
gagaaggtcgtagaggagctgaggaaactgatggagttttattccaaggaaactggagaa
agcaacaacttcttggccctggccctttcctccaggaagaacctctgcatccacccggag
gtgagtgctctgcgctttggtaaggaggttgatgggaagtgccacagtctgaccgcgtca
tacatccgtgcacaacgccacagcaacgccgacctgcccgcctgcagcttctacgaggag
tttgatgccgtcggcaggcaggtgcctcttcctgctggcgtctacaacctcgacgacctg
aaggacttcggcaggaggaaaggctggtgtccgtactatctggcacgctactcgattctg
catgccaacatcgtggtgtacagctatcactacctgctggaccccaagattgctgacctg
gtgtccaaagagctctccaagaaatctatagtagtgtttgacgaggcccataatatcgat
aacgtatgtatcgactccatgagtgtgaacatcaccagacgtacactggacaactgccac
aaaaatgtggacacactacagaacaccatacaaaagattaaggagacggacactgctaaa
ctgaaggaggagtacaggcgactggtggaggggttgaaggaagccaacgttgccagggag
accgacgtctacctcgcgaatccagtgttgccagatgaaattcttcgagaggcagttcct
ggtactattcgcacagccgagcactttgttggtttcctgaggcgtttcctggagtacctg
aagtctcgtctgagggtccaacatgtcgtgcaggagagcgccccgcagttcctcaaagac
atcttcgacaaagtctgcatcgaccgtaaacctctgaggttttgtgcggagcggttgcag
tcgttgctacgaactctggagattgccgacattgcagacttctccgcggttactctcatc
tctaactttgctacgctggtcagcacctacagccaaggtttcaccataatcatcgagcct
tttgaggacagaactccgaccattgcgaatcctgtgctgcacttcagttgcatggaccca
tctatcgccatcaaaccagtttttcaacgattccagtcggtcatcatcacctcagggact
ctctctccactggacatctatcccagaatcctggacttccgccctgttaccgtggcgtcc
ttcaccatgacactggcacggacctgcctctgtcccctgattgttggacggggaaacgac
caggtggccctcagctcaaagtttgagaccagggaagactttgctgtgattcgtaactat
ggcaaccttcttcttgagatgtctgccatcgttcctgacggcatcgtggcgtttttcacc
agttatgtttatatggagaacatagtggcagcttggtatgaacagggtatcctggaaaac
atccagaggaacaagctcatcttcatcgagactcaggatgctgcagagacgagcatggcc
ctggagaaataccaggaggcgtgtgagaacggcagaggagccatcctcctgtctgtggcc
agaggaaaagtgtctgaaggaatagatttcgtgcaccattttggccgggcggtcatcatg
tttggagttccttatgtttacacgcagagccgcatcctaaaggctcgtctggagtacctc
cgggatcagtttcagatcagagagaacgatttcctaacgtttgacgccatgcgccacgca
gctcagtgtgtgggcagagccatcagaggcaagactgactacggcctcatgatttttgcc
gacaagcgttacgcccgagcagacaaacgcgggaagcttccccgctggattcaggagcac
atcagcgatggcagtctgaacctcacagtggacgagactgtccatctctcaaagcacttc
ctgcggcagatggctcagcctttcagacaggaggaccagctgggtctgtctctgttgact
ctcgagcagctgcagtcggaggagatgctgcagaaaatcgctcagatcgctcatcagact
tga
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