Scophthalmus maximus (turbot): 118300352
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Entry
118300352 CDS
T09850
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
118300352 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smau04131
]
118300352 (rabgef1)
Membrane trafficking [BR:
smau04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
118300352 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
118300352 (rabgef1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
PIN_8
Motif
Other DBs
NCBI-GeneID:
118300352
NCBI-ProteinID:
XP_035480551
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All DBs
Position
2:17605330..17613032
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AA seq
565 aa
AA seq
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MKPRSILDCRVAVFRATSLSCPWRFVRHTSRRGGSCSCFMRSVKTTEQSRLSGIMSQRTE
RRGIHVDQSDLLCKKGCGYYGNAAWQGLCSKCWREEYQRVRQKQIQDDWALAEKLQREEE
AAYASSHGAQTQSHAQSTAPHSVHVSLGPFSKFEEKKTNEKTRKVTTVKKFFSPSSRTAP
KKETQEGKSSSPSISRHASFDTDQVSKDFVDFLKNLQKPGREIHKQCRAFIVNMSSKKDL
SADELSECVQDFYQNMSDRLMGHFKGSSDSVEQVMDQVEKYIMSRLYKSVFCPETSDDEN
KDLVTQNRIRALHWVTIQMLCVSMDEEIPEVSENVVKAITDIIEMDSKRVPRDKLGCITR
CSKHIFSAIRITMNEPASADDFLPALIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDG
YYFTNLCCAAAFIEKLDAQSLNLSPEEFDRYMSGQASPRFNSSEGDWPHAGSAPDVTATN
PVLAQLNHNLELLSGLSSKQERLMEAAQSLQADLLSWPESVQREVHGILEKYPLEIQSCT
ASAIDANNTDNDNLPPPLTPQVFAG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgcgttccatactggactgtcgcgtcgccgtcttccgggctacgtcattgtcg
tgtccctggcggtttgtccgtcatacgtcacgcagaggcggttcctgttcctgcttcatg
agatcggtgaaaaccaccgaacagtccaggttgtccggcatcatgagtcagcggacagag
cgccgggggatacatgtggaccaatcagacctgctgtgcaaaaagggatgtggttactac
ggcaatgcagcatggcagggtctgtgctccaagtgctggagggaggagtaccagcgggtg
cggcagaaacagatccaggacgactgggccttggcagaaaagttgcaacgagaggaggag
gcagcgtatgccagtagtcacggcgcacagacccagtcccacgcccagtccacagcacct
cactccgtacacgtctctctaggtcccttctccaagttcgaggagaagaaaaccaacgag
aagacacgtaaagtgaccactgttaagaagttcttcagcccttcatcccgcactgctccc
aagaaagaaacccaagagggcaaatcatccagtccgtccattagtcgccacgccagcttc
gatacagaccaagtgtccaaggactttgtggacttcttgaagaacctccagaagcccggc
cgggagatccacaagcagtgtcgagccttcatagtcaacatgtcgagcaagaaggatcta
agtgctgatgaactttcagagtgtgttcaggatttctaccagaacatgtctgaccgcttg
atgggtcacttcaaaggctcttcagattctgtggagcaggtgatggaccaagtggaaaag
tacatcatgagtcgtctgtacaagagcgtgttctgtccagaaacctctgacgatgagaac
aaggatttggtcacacagaacaggataagggctttacactgggtgacgatccaaatgctc
tgtgtgtccatggatgaagaaatccctgaagtctctgaaaatgtggtcaaagcaataaca
gatatcatcgagatggactcaaagagggttcctcgggacaaacttgggtgcatcacacgc
tgcagtaaacacattttcagcgccattaggatcaccatgaatgagccggcctccgctgac
gactttctccctgcactcatttacattgtgctcaaggctaaccctcctcgacttcagtcc
aacatccagtacatcactcgcttctgtaatccaagcaggctgatgactggagaggatgga
tactacttcaccaacttgtgctgtgcagcagccttcatcgagaagttggatgctcagtct
ctcaacctttccccggaggaatttgatcgctacatgtcgggccaagcttcaccgcgattc
aacagctcagagggtgactggccccacgctggctcggcacctgacgtgactgccaccaac
cccgtcctggctcagctcaatcacaatctggagctgttgtcaggcctcagcagcaagcag
gagaggctgatggaggcggcgcagagcctgcaagccgacctcctctcctggcctgagagt
gtacagcgggaggtgcacggcatcttggagaaatatcccctggagattcagtcttgcaca
gcttctgccatcgacgccaacaacacggacaatgacaacctgccaccgcccctcaccccc
caggtgttcgctgggtag
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