Scophthalmus maximus (turbot): 118300477
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Entry
118300477 CDS
T09850
Symbol
smg9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9 isoform X1
KO
K18735
protein SMG9
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118300477 (smg9)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118300477 (smg9)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
BrxC-PglY_N
ABC_tran
URGCP_GTPase
AAA_30
AAA_16
AAA_22
AAA_18
Motif
Other DBs
NCBI-GeneID:
118300477
NCBI-ProteinID:
XP_035480804
UniProt:
A0A2U9AYY8
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All DBs
Position
1:9745255..9752256
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AA seq
508 aa
AA seq
DB search
MSESGHSQPGMYGQGRRRRRRRGDRDVGPPGQNLSGPSRDREYQPRERRDGSEDPPGPLI
QKTPIILAKPPGERAKPSLNAPVTGAPVLEKPIMLMKARDDGAKTGTPPESTAQPSGSGP
SKIEREGQRPTQPVYQIQNRGMGASASSSAVDPMVGQSKLLPPEKMKHSIKLVDDQMNWC
DSAMEYLRDQTDMLVVGVIGLQGTGKSTVMSLLSANTPEEDQRSYVFRAQTQEIKERGGN
QSTGIDFFITQERVIFLDTQPMLSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFL
FTVCHVIIVVQDWFTDLSLYRFLQTAEMLKPSTPSASHDSAGSSGNDDGAEYYPHIVFLQ
NKAKRDDFCPRNLKNMHMVVDKLMAHSHLKYKGTLSMLDCNIFPGLGPDYLSPEVNMFLL
PVQESDGEDNLTKAGPGTYPLFSLLPGYKGHASFSTMVSKLRSQILTMPRCQLSHTILTE
KNWFHYAARIWDGVKKSSALSEYSRLLS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtccggccacagtcagcccgggatgtatgggcagggacgcaggaggaggcga
cgccggggggacagagacgttggacccccggggcaaaatctgtctggtcccagccgggat
cgagaataccaaccgagggaacgaagggatgggagcgaggatccaccaggtccactcatt
cagaagacccccatcatacttgcaaagccccctggggagagggccaagccatcgctgaat
gcacctgtcactggagctccagtcctggagaagcccatcatgcttatgaaagccagggat
gatggagcgaagacggggacccctccagagtcgacagctcagccttctggctccgggccc
tccaagatagagagagaagggcagcgacctacgcagcccgtgtaccagatccaaaaccga
ggaatgggtgcttctgcatctagcagtgctgtagaccctatggttggccagtctaaactc
ctccctccagagaagatgaaacatagcatcaagctagtggatgatcagatgaactggtgt
gatagtgccatggagtatctgagggaccagacagatatgttggtggtgggagtcattggc
cttcagggaacggggaaatctacagtcatgtcactgttatctgccaatacccccgaagaa
gatcagaggagttatgtattcagagcccagactcaagaaatcaaggaaagaggagggaac
cagagcacagggatcgatttcttcatcacacaggaaagagtcatcttcttggatacacag
ccgatgctcagcccgtctattctggaccacctcatcaacaatgaccggaagttgcctcca
gagtacaatctcccacacacatacgttgagatgcagtctcttcagattgctgccttcctg
tttactgtgtgccatgtgatcattgtggttcaagactggtttactgacttaagcctctac
aggtttcttcagactgctgagatgctgaagccttccactccgtcagcaagccatgacagc
gctggctcttcaggcaatgatgatggcgcagagtactatcctcatatagtgtttctccag
aacaaggctaagcgagatgatttctgcccaaggaatctgaagaacatgcatatggtggtg
gataaattaatggcccactcccatctcaaatacaaaggaacgttgtccatgctggactgc
aatatcttccctggcctgggaccggactatctgtcacctgaagtcaacatgttcctactt
cctgtgcaggagagtgatggggaggataatctgactaaagcagggccaggaacgtacccg
ctcttctccctgctcccgggatacaaaggacacgcctctttctccactatggtttcaaaa
cttcgcagccaaatactgaccatgccccgctgtcagttgtcacacaccatcctcactgag
aagaactggtttcactatgcagctcgtatctgggatggggtgaaaaagtcctcggcgctg
tcagaatacagccgcctgctcagctaa
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