Scophthalmus maximus (turbot): 118300822
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Entry
118300822 CDS
T09850
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03030
DNA replication
smau03420
Nucleotide excision repair
smau03430
Mismatch repair
smau03440
Homologous recombination
smau03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118300822
03420 Nucleotide excision repair
118300822
03430 Mismatch repair
118300822
03440 Homologous recombination
118300822
03460 Fanconi anemia pathway
118300822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smau03000
]
118300822
03032 DNA replication proteins [BR:
smau03032
]
118300822
03400 DNA repair and recombination proteins [BR:
smau03400
]
118300822
Transcription factors [BR:
smau03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118300822
DNA replication proteins [BR:
smau03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
118300822
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
118300822
MMR (mismatch excision repair)
118300822
DSBR (double strand breaks repair)
HR (homologous recombination)
118300822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Extensin_1
CDC24_OB3
SOG2
Motif
Other DBs
NCBI-GeneID:
118300822
NCBI-ProteinID:
XP_035481526
LinkDB
All DBs
Position
2:21898729..21942780
Genome browser
AA seq
671 aa
AA seq
DB search
MSVALTRGAIEALVQGSQVDNPVLQLLNMRSIDCSSGQTRFRLKMSDGQHSLSSLLLASQ
LNYLVEENLLVPTCVCMLKKTTTSTLSDGRLVVTVIDMEILQSAEETGGMIGNPTPSYAR
DKTSSSEDSISSPPACSSSVAVPGPSYEDNITHSPPQGWGRSFGGTSPMKMSPMKMSPMK
MSPMKASPMKASPMKASPMKASPMKASPMKASPMKMSPMKMSPMKMSPMKATSSSPGSST
KVMPIAELNPYQSKWTIRARVTNKSNVRTWSNSRGDGKLFSFEIVDESGEIKITAFNNEV
DTFFSLVEQGKVYYISKATLKVANKKYNSLKNDYEMTLHANTSIVPCDDGQEVPTVQCDF
VPIAQLENRDKDAVIDVIGVCKSAEDVSRITTKTSREVSKRALHLIDRTGKVVSVTLWGE
EAEKFDGTGQPVVAIKGARLSDFGGRSLSVLFSSTLMVNPDIPEAFRLRAWYDQEGFALD
SQSLTETRSVGSGAKMNWKTLSDVKNEHMGHGEKADYFTCLATVLYMRKENCLYQACPSA
NCNKKVVDQQNGLYRCEKCNREFPNFKYRFLLYANLADFGDNQWVTCFQETAEVLLGHSA
ETLGHLRDTDETAFNEVFQKANFTTHIFKNRVKLETYNDEIRVKATVMEVQPVDHREYSR
RLLSNIRRLAS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggcgctcacgcgaggggcgattgaagccctggtccaaggctcacaggtggac
aaccccgtactgcagcttctgaacatgcgttcgatcgattgttcctcgggccaaaccagg
ttccggcttaagatgagcgacggtcaacactctttgtcttccttgctgctggcctcccaa
ttaaattatctggtggaagagaacctcctggtaccaacctgtgtgtgcatgctgaagaag
accaccaccagcacattgtcagatggcaggctcgtggtgactgtgattgatatggagata
ttgcagtcggctgaggaaaccggagggatgattggaaatccaactccatcttatgcaaga
gataagacgtcatcttcagaggattcgatctcaagccccccagcgtgctcttcgtcagta
gcagtacctggaccctcctatgaggacaacataacccattctcctccccaaggctgggga
agaagttttgggggaacatcacccatgaagatgtcacccatgaagatgtcacccatgaag
atgtcacccatgaaggcgtctcccatgaaggcgtctcccatgaaggcatcacccatgaag
gcatcacccatgaaggcatcacccatgaaggcatcacccatgaagatgtcacccatgaag
atgtcacccatgaagatgtcacccatgaaggctaccagctcctctccaggttcttcaaca
aaagtgatgcctattgccgaactcaacccctaccaaagcaagtggactatcagagcccga
gtcaccaacaagtccaatgtccgcacctggagtaactccagaggggacggcaagctcttc
tcctttgagatagtggatgagagcggagaaatcaagatcacggccttcaacaacgaggtg
gacacgtttttctctttagtggagcaaggcaaggtgtactacatctccaaggcaacgctg
aaggtggccaacaaaaagtacaattcgctgaagaacgactatgagatgacgctgcacgct
aatacatccattgtgccgtgtgacgacggtcaggaagtccccacagtgcagtgtgacttt
gtgcccattgcccagctggaaaacagagacaaagacgccgtcattgatgttatcggtgtg
tgcaagagtgcggaggatgtgtcccgtatcaccactaagaccagcagagaagtctccaag
agggccctccacctaatagacagaactggcaaagtagtgtcagtcacactgtggggagag
gaggcagagaagtttgacggcactgggcagcctgtggttgccatcaaaggcgctcgcttg
tctgatttcggaggcagatctctctctgttttgttcagctcaacactcatggtcaaccca
gacataccagaggcctttagattgagggcctggtacgaccaggaaggcttcgctctcgac
agccaatccctgacagagacgaggtcagtgggcagcggggcaaagatgaactggaaaaca
ctgagcgatgtgaagaatgaacacatgggacatggagagaaggcggactatttcacctgt
ttggcgacggtgctgtacatgcgcaaggagaattgtctgtaccaggcctgtccatctgca
aactgcaacaagaaggttgtagaccaacagaacggactgtatcgctgcgaaaagtgtaac
agagagttccccaactttaaatacagattcctactctatgccaacttggcagacttcggg
gataaccagtgggtgacgtgcttccaggagacagctgaggtcctgttaggtcacagcgca
gaaacactgggacacttaagagacacagacgagacggcatttaatgaagtcttccaaaaa
gccaacttcacaacgcacatctttaaaaacagagtcaagcttgagacgtacaacgatgag
attcgggtgaaggcaactgtgatggaagtccaaccagtggaccacagggaatacagcaga
aggctcctcagtaacatccgcagattggccagctga
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