Scophthalmus maximus (turbot): 118301005
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Entry
118301005 CDS
T09850
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03440
Homologous recombination
smau03450
Non-homologous end-joining
smau04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118301005 (rad50)
03450 Non-homologous end-joining
118301005 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
118301005 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smau03032
]
118301005 (rad50)
03400 DNA repair and recombination proteins [BR:
smau03400
]
118301005 (rad50)
DNA replication proteins [BR:
smau03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
118301005 (rad50)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
118301005 (rad50)
BRCA1-C complex
118301005 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
118301005 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
ABC_tran
AAA_29
zf-met
AAA_16
AAA_22
AAA_13
Motif
Other DBs
NCBI-GeneID:
118301005
NCBI-ProteinID:
XP_035481909
LinkDB
All DBs
Position
2:complement(20503044..20525802)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATAGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIHRSMSCTQKAKNYSFKSLEQVITR
IKDGEKVSLSSKCGELDREMISALGVSKPVLNNVIFCHQEESNWPLCEGKALKDKFDSIF
AATKYIKALETMRQLRLTQNHTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMASKDN
VEHIESQIDPLENRLMDIDTKLGKVMKLDNDIKALDSRKKQMEEDNRELEETMEQVFQGS
DEQLQDLYQNHQRTVKEKERRLTDCQKELERAGRECQRLNRVKAELLVEQGRLQLEADRH
TQNIKNRDTQVRSLSSYLEMEGYDRPPFTTLQLESFHRHVTQRLEQEKDTVGQVLADLQE
KEQQKQQSIDEIRDKKTGLERTVELKRDLQGKKQQELRNVRAELQRLEGSSTRLQELENE
LAKVERELQSTVQSSNVEELKAEVVELQREKAELDRAQRRLDQEMETLNAHTTTRTQMEM
LKKDKTEKEDQVRKIKSRHGEELVSLLGHFPNKRELEDWIYAKSKEINSTRDRLAKLNKD
LASNEQNKSHIASELRKKEQQLASDEEKFFNVCGSQDLEQDLGKLQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPGESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKKDEMMALKPVRKSIVQFQEKELPELRNRLQTVNRDIERLKGDVEEQETLLGTRMS
EEDTAKACLQDISLMDRYLMDLKDVERKIAQQAAKLQGVDLTRTIQQVSQEKQETQHKID
TTSSRMELKRKLIQDQQDQLQMLKSVVNETRAEKLQLSSDMQKQQQLEEQSVEFTTEIQA
LTRDIREAKEQLSPLSAALEKLQQEKQELVEQKRQRQEEGQEKINAIKERVKVITTLERD
ITKYVDEGKDEYKEQKETELQETNTQLHDAEKQKEKINREMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVSKHKALMKDMGNMQVLQLRQERREAERRLEDLKKNRSIALGRQKG
FEEEILDYRKELREDQYDKADERYKNKMIIMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAAVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatcctgggggtgaggagctttgggatcgaggataaa
gacaaacaagtgatatcgttcttcactcctctgactgtgctggttggacccaacggagcg
gggaagacgactattatcgagtgccttaagtatgcaacagcaggagaacttccccctgga
tctaaaggcggggcctttgttcatgatccaaaggacgcccatgagacagacgtgcgagca
cagattcgcctcttattctcggatgtaaacggagagaaagtgaccatccatcgctccatg
tcgtgcactcagaaggcaaagaactactccttcaaaagcctagagcaggtcatcactaga
ataaaagacggtgagaaggtgagcttgtcgtcgaagtgtggagagctggaccgggagatg
atttctgctctgggtgtatcgaagcctgtgctgaataatgtcatcttctgtcaccaagag
gagtcgaactggccactttgcgagggcaaggcactcaaagacaagtttgactccatcttc
gctgcaacaaagtatatcaaagctcttgagacgatgcgtcagctgcgtctgacacagaac
cacacggtcaaagagtgtcaggtagagctgcgctacctgaagcagaacaaggagaaggcc
cagcagataagggagaccgtggccaccaaggaggctcagctgatggcctccaaggataac
gtagagcacatagagagccagatagatccacttgagaatcgactgatggatattgacacc
aaacttgggaaagtgatgaagctggacaacgacatcaaggctttagacagcaggaagaaa
caaatggaggaggacaacagggagctggaggaaacaatggaacaggtgtttcagggctca
gatgagcagctgcaggatctttatcagaaccaccagaggacggtgaaggagaaggagcgc
aggctgacagactgccagaaggagctggagagagccggccgcgagtgtcagcgactgaac
agagtcaaggccgagctcttggtggaacaaggtcgccttcagctggaggccgaccgccac
actcaaaacatcaagaaccgtgacactcaggttcgctccttgtcatcctatctggaaatg
gagggctatgaccggccgcccttcaccacgcttcagctcgagagctttcaccgtcacgtc
actcagagactggagcaggaaaaagacacagtcggtcaagttttggcggacttgcaggag
aaagagcagcagaaacagcagtccattgatgaaataagggataagaagaccggcctggag
agaaccgtggagctgaagagagacctgcagggaaagaagcagcaggaactgaggaacgtc
cgagcagagctgcagaggctggagggttcgtccactcgactgcaagaactggagaatgag
ttggctaaagtggagcgcgagctgcagagcacagtgcagagctccaacgtggaggagcta
aaggccgaggttgtggagctccagagggaaaaggctgaacttgaccgcgcacagagacgg
ctcgaccaagagatggagacgctcaacgcacacaccaccacccgcacacaaatggagatg
ctgaagaaagacaagacagagaaggaggaccaggtacgtaagatcaagtctcgtcacggc
gaggagcttgtgtcattacttggtcactttcccaacaagagagagctggaagactggatc
tatgccaagtctaaggaaatcaacagtacccgggacagactcgccaaactcaataaggac
ctggcatccaatgagcagaataaaagccacattgcttctgagctgcgcaagaaagagcaa
cagttagccagtgatgaagagaagttcttcaacgtgtgtggcagtcaggatctggagcag
gacctgggaaaactgcaggaagatctggagaagatatccaaacaaagagccatgctcgct
ggagccacggcagtgtacacccagtttatcagccagctgacggaggagagggagccctgc
tgccccgtgtgccagcggacgttcccaggcgagtccgatctgcaggaagtcatcagcgac
atgcagtccaaactgcgcctggtgccggacaagctgaagaacacagagcaggacctgaag
aggaaggagaggaagaaagacgagatgatggctctcaaacctgtcaggaagtccatcgtg
cagtttcaggagaaggagttgcccgagttgaggaaccgtctgcagactgtgaacagggac
atcgagagactgaagggagacgtggaggagcaggagacgctgctcggtactcggatgtca
gaggaggacacagccaaggcctgcctgcaggacatatctctcatggacagatacctgatg
gaccttaaagatgtggagaggaaaatagctcagcaggcagccaaactccagggagtagac
ctgaccagaaccatccagcaagtcagtcaggagaaacaagagactcagcataagatagac
accacctccagcaggatggagctgaaacgtaagctgatccaggaccagcaggatcagctg
cagatgctaaaaagtgttgtgaatgagacgagagcggagaagctccagctgagcagtgat
atgcagaaacagcagcagctggaggagcagagtgttgagttcaccaccgagatacaggcc
ttgaccagggacatcagggaagcaaaggaacagctctccccgttgtctgctgctctggag
aagctacagcaggagaagcaggagctggttgagcagaagaggcagaggcaggaagaagga
caagagaagatcaatgccattaaagagagagtgaaggtgatcaccaccttggaaagggac
atcaccaaatacgttgatgagggcaaagatgaatacaaagagcaaaaagagactgagctt
caagaaaccaacactcagctgcatgatgctgagaagcaaaaagaaaagatcaacagggag
atgggaaacatccgtcaggacatagacactcaaaaggttcaggagcgctggttgcaggac
aacctgaccttgaggaagcgcgtggaagagttgaaagaggttgtgagcaaacacaaggct
cttatgaaagacatgggcaacatgcaagtcttacagctccgccaagagcgacgtgaagca
gaacgcaggttggaagacttgaagaagaaccgcagcattgcgcttggtcgccagaaaggc
tttgaggaggagatactggattacagaaaggagctgcgggaagatcagtacgacaaagca
gatgagcgctacaagaacaagatgatcataatgcggaccacagagctggtcattaaagac
ctggatctctactacaaggcccttgatcaaacaatcatgaaatttcacagtatgaagatg
gacgagatcaacaagattatcagagacctgtggcgcagcacctacaggggtcaagatatt
gaatacgtggagatcaggtccgacgtggacgagaactcgtccgccgcggtgaagcggagg
gtttacaactacagagtagtcatggtgaaaggagacaccgctctggatatgagaggacgc
tgcagtgctggtcaaaaggtgttggcgtccctcatcatccgtctagctctggccgagact
ttctgtctgaactgtgggatcctggccctggacgagcccaccaccaacctcgaccgggag
aacatcgagtcactggcacacgccctcgtagaaatcatcaagagtcgttctcgccagcgc
aacttccagctgctgatcatcacccacgacgaggacttcgtggagctgctgggtcgatcc
agctacatcgaacacttctaccgcatccgcaagaaccaggaccagaactcagagatcaca
aagtgcagcatcacctccctctcctcctacctccactga
DBGET
integrated database retrieval system
