Scophthalmus maximus (turbot): 118302157
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Entry
118302157 CDS
T09850
Symbol
neo1a
Name
(RefSeq) neogenin 1a isoform X1
KO
K06766
neogenin
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04350
TGF-beta signaling pathway
smau04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
118302157 (neo1a)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118302157 (neo1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smau04515
]
118302157 (neo1a)
Cell adhesion molecules [BR:
smau04515
]
Immunoglobulin superfamily
DCC/UNC5 family
118302157 (neo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
V-set
Interfer-bind
Tissue_fac
fn3_2
NDNF
C2-set_2
SusE
Sp38
V-set_CD47
EphA2_TM
DUF4834
TMEM154
TM_ErbB1
PRIMA1
Motif
Other DBs
NCBI-GeneID:
118302157
NCBI-ProteinID:
XP_035483970
LinkDB
All DBs
Position
4:complement(4864389..5015995)
Genome browser
AA seq
1509 aa
AA seq
DB search
MAERGALSLLSLLCLTFLYTATTAAKHVDKGSAAQPFIPFWFTAEPQDTLAIRGNAAVLN
CSAHSDAATPARIEWKKDGTFMSLVSDERRHILPEGLVFNHVVHSKHNKPDEGTYQCVAT
IDNLGSISSRTARLSVAGMPRFGSQPAPTTVRLGDSQVMACEVNADLVPFTRWEKDRQPL
EPSSRLVQLPSGALAIGNASEADAGLYRCLVENVGSSKSSDEAQLRTLPETGEDRRPEFL
VQPAPVTKVLGAGVLLPCVVSGHPAPHVSWMLGDKTLQESDGRLEVLAGGSLQISNLTEE
DAGVYTCVADNSNATIEAQAQLTVQVPPQFVKRPANVYAHESMDIVFECEISGSPAPTVK
WVKNGDAVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCLAENDAGNIQSSAQLIILDHDVA
LPSFPPPPLTPNTTDHVTPGSGGVASPAGPTPSAPRDVVASLVSTRFIKLTWRPPAEPHG
DELTYSVFYSQEGTSRERVVNTSRPGEMAVTIQNLMPDSKYRFRVVAHNGNGQGESSAAL
KVATQAEVQVPGPAPNLQVASNAPTSVSLSWDKPLTGNGEMLTYKLYYTDKSFGDEQDID
VDGQSYTMSGLKKNTEYSFRVVANNKHGPGVSTEDVVVRTLSDVPSAPPQNLTVEVQNSK
SIMLRWQPPPLNGQNGEITGYKIRYRKGSRRSEAAETTGGTQLSKLIDGLERGTEYSFRV
SAVTVNGTGPATDWNAAETFESDLDESRVPDQPSSLHVRPLINSIVVSWTPPENQDIVVR
GYTIGYGIGSPHAQTIKVDYKQRYYTIENLDASSHYVITLKAFNNVGEGIPVYESAITRP
QSDPIDPDVDLYELFHAPYTPVPDPSPMMPPVGVQASVLNHDTIKVTWADNSLPKNQKIT
DNRFYTVRWKTNIPANTKVKMANTTSLNHVVTGLKPNTLYEFSVMVTKGRRTSTWSMTAQ
GTTFETIPSSSPKDVTVVSKENKPHTIIVNWQPPSEANGKITGYIIYYSTDVNAEVHDWV
IEPVVGNRLTHQIQELTLDTTYYFKIQARNSKGMGPMSDAVNFRTPNTESSDKMANDQAS
NLPPKPGPSGNQHPHDPGNAVGKSGVGSNSENHILVIVIIISVGAFTIIVVVVGAFLCTR
RTTSHQKKKRAASKSSNGSHKYKGNSKDLKPPDLWIHHERLELKPMDKSPDPNPVMTETP
IARTSQDITPADSGLDGNPHLQQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDAQPPQ
PVISAHPIHSLDNHHHHYHMGSLASPTRSYLYHQGSGHPRPHACATPISHLERVDSTESV
RNTPSSEPLPPAAASSQASCPSEIMADPEGSYHGSTTTEEEPSYSSNLPPHRSAHPHAHA
HPLKSFAVPAIPATGHPTYESSALPSTPLLAQSGPPTHPHVVKTACIGTLGRTRPPMVVT
VPNAPDVPETSKMLEDVDSVLASLPPCPSPAPRSNPVPLPQNYEPDELTEEMAHLEGLMK
DLNAITTAP
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcggggagctctgtcgctcctctctctcctctgtctcacctttctctacacg
gcgaccaccgcggcgaagcatgtcgacaaaggttcagcagcgcagcccttcatccccttc
tggttcacggcggagccccaggacacgctggccatccggggcaacgcggcggtgctcaac
tgctcggcccacagcgatgcggccacgccggcgcgcatcgagtggaagaaagacggcacc
ttcatgagcctggtgtcggacgagaggcggcacatactccccgagggcctggtcttcaac
cacgtggtccactccaagcacaataagcccgacgaggggacgtatcagtgcgtcgccacc
atcgacaacctgggatccatctccagccgcacggcgcgcctctccgtagccgggatgccc
cgctttgggagccagccggcgccgaccaccgtgcgcctaggggacagtcaggtgatggcg
tgcgaggtcaacgcggacctggtgccgttcacccgctgggagaaggaccggcagccgctg
gagccgagcagcaggctggttcagctgccgagcggcgccctcgcgatcggcaacgcctcg
gaggccgacgccggcctctaccgctgtctggtggagaacgtgggctcgtccaagtccagc
gacgaggcccagctccggacgctgccagaaactggagaagaccggaggccggagttcctg
gtgcagcccgcgcccgtgaccaaggtgctgggcgccggcgtgctgctgccctgcgtcgtc
tccggccaccctgcgccgcacgtcagctggatgctcggagacaagacgctccaagaaagt
gacggccgcctggaggttctcgcaggaggcagtctgcagatctccaatctcaccgaggag
gacgccggcgtctacacctgcgtggcggacaattcgaacgccaccatcgaagcccaggct
caactcacagtgcaagttcctccgcagttcgtcaagcggccggccaacgtctacgcccac
gagtccatggacatcgtctttgagtgcgagatttcagggtcaccagctcccactgtcaag
tgggtcaagaatggagacgctgtcatccccagcgactactttaaaatagtcaaggagcac
aacctgcaggttctgggtctggtcaagtccgacgagggtttttaccagtgcctcgcggaa
aacgacgccggcaacatccagtccagcgcccagctcatcatcttggatcacgatgttgcc
ctgccctctttccctccccctccactgactcctaacactactgaccatgtaacgccaggc
tcgggaggcgtagccagtccagcggggcccactccctcggccccccgtgacgtcgtggcc
tccctggtgtccacgcgcttcatcaagctgacctggcgcccaccggccgaaccgcacggc
gacgagctcacctactcagttttctacagccaggagggcacgagcagggagcgagtggtg
aacaccagccgtcccggggagatggcggtcaccatccagaatctcatgccggacagcaaa
tatcgcttcagggtcgtggcgcacaacggcaacggccagggggagagctcggcggcgctc
aaagtggccacccaggctgaagtccaagtgcccggccccgctcccaacctgcaggtggcg
tcgaacgctccgacctccgtctctctgagctgggacaagcctcttactggcaacggggag
atgctcacctacaagctgtactacacggacaagagcttcggcgacgaacaggacatcgat
gtcgacggtcagtcctacaccatgtcgggcctgaagaagaacacggaatacagtttccgc
gtggtggccaacaacaagcacggtccaggcgtctccacggaggacgtggtcgtccgcacc
ctgtctgacgtgccgagcgcccctccgcaaaacctcaccgtggaggtccagaactcaaag
agcatcatgcttcgctggcagccccctcccctcaacggccagaacggggagatcacgggc
tacaagatccgatatcgcaaagggtcgcggaggagtgaggcggccgagaccaccggaggc
acgcagcttagcaagctcatcgacggtctggagcgcgggacggagtactccttccgcgtg
tcggccgtgacggtgaacggcacgggaccggccaccgactggaatgcggccgagacgttc
gagagcgacctggatgaatcgcgtgtgcccgaccagcccagttccctccacgtgcggccg
ctgatcaacagtatcgtggtgagctggacgccgccagagaaccaggacattgtggtgcgc
ggctacaccatcggctatggcatcggcagtccccacgctcagaccatcaaggtggactac
aagcagcgctactacaccatcgagaaccttgacgccagctcccactatgtgatcacactg
aaggccttcaacaacgtgggcgaggggattcctgtgtacgagagcgccatcaccagaccg
cagtcagaccccattgaccccgatgttgacctgtacgaactcttccatgctccatacacc
ccagtaccagacccctcccccatgatgccgcccgtgggcgttcaggcctctgtgctgaac
cacgacaccatcaaggtgacctgggcggacaactcgctgcccaaaaaccagaagatcaca
gacaaccgcttctacacggtgcgatggaagaccaacatccctgccaacaccaaagtgaag
atggccaacaccaccagcctgaaccacgtggtgacgggtctgaagcccaacacactgtac
gagttctccgtcatggtgaccaaaggccgccgcaccagcacgtggagcatgactgcgcag
ggaacgacatttgagaccattcccagctcctctccgaaagacgtgaccgtggtgagcaag
gagaacaagccgcacaccatcattgtcaactggcagcctccgtcggaggccaacggaaag
atcacgggctatataatctactacagtacggatgtaaacgcggaggtccacgactgggtg
atcgaaccggtggtgggaaaccgtctgactcaccagatccaggagctgacgctggacacc
acctactacttcaagatccaggcccgcaactccaagggcatgggccccatgtccgacgcc
gtgaacttccgcactccaaatactgagtcctctgacaaaatggctaatgaccaagcctcg
aatctcccgccgaagccggggccttcaggcaaccaacatccacacgaccctgggaatgca
gttggtaaatcaggtgtgggaagcaacagtgaaaatcacatcctggtcatcgtcatcatc
atctcggtgggtgccttcaccatcatcgtggtggtggttggcgccttcctgtgcacacgg
cgcaccacgtcccaccagaaaaaaaagcgggccgcctcaaagtcctcgaacggctcccac
aagtacaaggggaactccaaggacctgaagccaccggacctttggattcaccacgagagg
ctggaactcaaacccatggacaagtcgccggaccccaatccggtcatgaccgagacgccc
atcgcccgcacctcgcaggacatcacgcccgctgacagcggcctggacggcaacccccac
ttgcagcagaggcgtaactcctaccgtggccacgaatcagaggacagcatgtctacacta
gcaggtcgacgtgggatgaggcctaaaatgatgatgccttttgatgcacagccgcctcag
cctgtgattagtgctcaccccatccattccctcgataaccatcaccaccattatcacatg
gggagcctggcgtcgccaacacggagctacctctaccaccagggcagcgggcatccgcgc
ccgcacgcctgcgccacccccatctcccacctagaaagggtggactccacagagtcggtg
aggaacacccccagttcggaacctctccctccggccgccgcctcctcccaggcgtcttgc
ccctcggagatcatggccgaccccgagggcagctaccacggctccaccaccacagaggag
gagcccagctactccagcaacctgcccccgcaccgctcagcccacccgcacgcccacgcc
cacccgctcaagagcttcgccgtgccggcgatccccgccaccggccaccctacatacgag
tcgtctgcgctgcccagcacccccctgctcgctcagagcgggccgcccactcacccccac
gtcgtgaaaacagcctgcattggaacactaggaaggacacgaccaccgatggtggtcact
gtgcccaacgcccccgacgtgccagagaccagcaagatgttggaggatgtagacagcgtg
cttgcctccctccccccctgcccctcccccgcccctcgcagtaaccctgttcctctccct
cagaactacgagcccgacgagctgaccgaggagatggcccacctcgagggcctgatgaag
gacctgaacgccatcaccacagcgccatga
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