Scophthalmus maximus (turbot): 118302567
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Entry
118302567 CDS
T09850
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smau03036
]
118302567 (chd9)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
118302567 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HTH_Hrp3
DEAD
HDA2-3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
118302567
NCBI-ProteinID:
XP_035484714
UniProt:
A0A8D3A9J4
LinkDB
All DBs
Position
4:20311328..20380416
Genome browser
AA seq
3031 aa
AA seq
DB search
MDFFDDPSLFVGGLEGLDEDGFSSAPSLVDELNLSADFEPLQVEPLGPGKHQDAMPPVST
QQVMPTYSQPMGHYIGVKAQNIAGQAFPGHGGTVGGGAGGIMPEQHGQYHTAAMSQVPQS
NGLFCNSSSPMWGNQDQNGNMYHQISQQQPHQQQQLCHQQQQLHNQQLNVQQQHVRLQQH
HPCHQQQQEQQHRLRQQQLQQQQSHQQQLLSQRQPQQITTQTMPLPQPQHHNFSFHRGSQ
SQGQQQVLHSHRGVQHQLTVGGPRFQPRALPSKPYLDSQNASLSATCLQQQQQQHGSYHL
TSGGQAFSGPGLEDPILPFPMNSSSMVHSLPTCSVSSATAYQPAQYPAYPGEPEIPGLNQ
HSLSSASVSGPTPTAAVPLISAVPELSGTVCQFPSTGVMAQPHTGIPVSQAEECPFRALR
CSGESQGNSGSSEMFGESMSCYPIMASQLPSEQPQSCGAIDTNGYRALGDSLLTTEAQDG
DLEELEPPDLLPDLLPQLEAALSQQDESSCSWSNSSLGRGHEHRKQPPVEYKIEKPRKNS
NGPGSQIRVLSPPVKSSSSSSSSSSSSSSSSSSSSEKRTPRRTHQQMESAQPDKQEKANR
IISEAIAKARQRGEKNIPRVMSPESFPSSSSQHKSHRDREHKGNGKARSKEKACRKACIV
PSSKPKQRAKIGKIVIKIGKKKKRKPESSEEESDDDPPPRHTSKNDSKRRSNRQVKKKKY
AEELEARLSDEEVKVIVKAKKSNTAASKEPALQLFVENPSEEDAAVVDKIMSSRVIKKEV
SPGVVVEVEEFFVKYKNYSYLHCEWATEQQLVKDKRIQLKIKRFKMKQAQRALFFADMEE
DAFNPDYVEVDRVLEVSYCEDKDTGEEVVYYLVKWCSLPYEDSTWELKDDVDQSKIEEFE
RLQAVKADSRRVERPPANLWKKREQSRAYRNGNSLRDYQLEGVNWLLFNWYNRRNCILAD
EMGLGKTIQSITFLEEIHRVGIKGPFLIIAPLSTIANWEREFHTWTHLNVIVYHGSMVSR
QMLQQYEMYFRDAQGRVIRGAYKFRAVITTFEMILGGCPELNAIEWRCVIIDEAHRLKNK
NCKLLEGFKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPARFPSENTFMQEFGDLKTEE
QVQKLQGILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGA
GQANMPNLVNTMMELRKCCNHPYLIKGAEEKILEDFREVYSPTAIDFHLQAMVQSAGKLV
LIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS
KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYR
LITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSLGGGAGGGAVQQQLSKKEIEDLLRR
GAYGAIMDEEDEGAKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLD
DPNFWDKWAKKADLDMDMVNGRNSLVIDTPRVRKQTRPFSATKDELAELSEGGSDSDDTK
PKLRRNHDRLNSYGRTECFRVEKNLLVYGWGRWKDILNHGRFKKQLTERDVESICRALLS
YCLVHYRGDDKIKSFMWDLIAPTEDGQTKELQNHLGLSAPVPRGRKGKKMKTQSSSFDIH
KAEWLRKHNPEHMLQDDGYKKHLKHHCNKVLLRVRMLYYLKQEVIGSQAQNVLDGVDSSE
IKIWVPDPDHSELPALWWDAICDKCLLLGIYKHGYEKYNTIRADPTLCFLDRVGRPDEKA
IAAEQRSNDFMDGDVDDPEYKPAPALLKDEMEDDASSPGDLVVTDNAGDAAPVTEGQTAF
WPSSPVLTARLRRLITASQRFTKSRQILSIHQAQSQSQSQPTMILAAPLCPLPPTLNDTL
NPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPNLGRFDWTKFRAMARLHKKTDESLQ
KYLCAFAAMCRRVCRLPPKEGDSAADPSLTIQPITEERASRTLYRVELLRQVREQVLRHS
SLYERLPLCQMSSDLPVWWEAGTHDRDLLVGAAKHGVSRTDYHILRDPELSFMAAQRNYS
QTKGAQQQSRTSTPLLHPQHQATSSVLTGSPLPPVAQRDTEPCGVVPKVEPASEGEESRE
ESRENRGESWSPPRAPATPTGLEEKPVLETRDNERQMVAARTKPLTPNSSERKPKKASKR
GRREARRGSDSHSGGSSSSSSSRSSSSSSSSSSSSSHSGSSSSSSSSSCTSGSSSSSSSS
SSSSDDSESEGEEGKKKVPAATSVKGFDEDSVASLSTTQDELQDTHVAENGIAHNSSHPF
QGGGYMLAASYWPKDRVIINRLDSICQAVLKGKWPGTRRVYEPGGAVASFYTTKLLDNAN
SLCEDPSASPQGSKVTKHVAENKEFSVKLNDEGGLKLTFQKQGLPLKRPLESEEGPQAQQ
QYLARLHELQSASDTGLADITKPQCSFQTVPPVLTGQMRLNGILDGQPVVKKRRGRRKNV
EGMDLLFMNSSRVPAVPDQLPPGWGGIGQVGMAAAPAPCYSQSSSQVPGDTESRVPVINL
KDGTRLAGDDAPRRTDLEQWLKEHPGFVADTGAYIPGVNKMQMQFHFQDGRPKQKRHRCR
NPNKIDVNSLTGEERVQIINRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQ
SGYLPESMFDRILTGPIVPEEVSRRGRRPKNPLAKASASAGSPAAAAAAASALGLNPLLA
NGLLSGMDLPSLQAFQQNLQSLQSLQLTAGLMGLPSDASNLAASNLAAMFPMMLSGMAGL
PNLLGMSSMLGKPAQEGTGGLEEKTEGTSSGAGGEPSASKAPSHTSDTKGERTESSNMTP
SSASGSSSFATAPQSASAASAASSHPLSLNPLLLSSMLYPGMLLTPGLNLPVSAAQPQGS
NSDPTFPPAPLPSPSAASKSSPREARQPAAAREEEEEEDEALEEALDNEEEEDESAEQKE
NSGPEGKAETSSSESGSSSSSSDDSDSSDED
NT seq
9096 nt
NT seq
+upstream
nt +downstream
nt
atggacttctttgatgatcccagcctctttgttggaggcttggaagggctggacgaggat
gggttttcctcagcaccatcacttgtggatgagctgaacctcagtgctgactttgagccc
ctccaagtggagcctctgggcccagggaagcaccaggacgcaatgccaccagtttctacc
caacaagtcatgcccacttacagtcaaccgatgggtcactacattggcgttaaggcgcag
aatattgcagggcaggcctttcctggtcacgggggcacagttggtggtggtgctggcggc
ataatgccagagcaacatggccagtatcacactgccgccatgagccaagtgcctcaatcc
aatgggctgttctgtaacagcagcagtccaatgtggggcaaccaagaccagaatggcaat
atgtaccaccagatatctcaacagcagccacatcagcaacaacagctttgtcatcagcag
cagcaactgcacaaccagcaacttaatgtccaacaacaacatgtacgactgcagcaacac
cacccctgtcatcaacaacaacaggagcagcagcacagattgcggcagcagcagctgcaa
caacagcaaagtcatcagcaacagctgttaagccagcgccagccccaacaaattaccacg
cagactatgcccctgccgcaaccgcagcatcacaatttctctttccacagggggagtcag
tctcagggccaacagcaagttctccatagtcaccggggggttcagcaccaactaactgtc
ggaggaccgcggttccagccaagggccctgccaagcaagccttacttggatagtcagaat
gcttctctgagtgcgacttgcttacaacaacaacagcagcagcacggtagctaccatttg
acctcaggaggccaagccttctctggaccggggctggaagaccctatactgcctttcccc
atgaattcatcatcgatggttcactccctgcccacgtgctcagtcagttctgcaactgct
taccaaccagcccagtaccccgcttaccccggagagcccgaaatacccggcctcaatcag
cattctttgtcctcggcctcagtatctgggcccacacccaccgccgctgtacccctcatt
tccgcagtgcctgagctatcagggacagtatgtcagtttccatccacaggagttatggct
caaccgcacactgggatcccggttagccaggcagaggaatgtcctttccgggccctacgc
tgttctggagaaagccagggaaacagtgggtcatctgagatgtttggcgaatccatgagc
tgctaccccatcatggccagccagctgccctctgaacagccccagagctgcggggccatc
gacaccaatggataccgggccttgggagatagtctcctgacaacggaggctcaggatgga
gatttagaggaactggagcctcccgacctcttgcctgacctactgccccagctagaggct
gctctcagccagcaggatgaatccagctgttcctggtccaattccagcttggggaggggg
catgagcacaggaaacaaccacctgttgagtacaagatagagaagccccgaaagaactcc
aatggtcctggtagccagatacgggtcctcagtcccccagtgaagagcagctcttcgtct
tcctcctcttcctcatcatcttcatcctcatcaagctcctcgtctgagaaaaggacgccg
cggaggacgcaccaacagatggagtcagctcaaccggacaagcaggaaaaggccaatcgg
ataatatcagaggctattgcaaaggcccggcagcgtggggagaagaacatcccccgagtt
atgagcccggagagcttccccagctcttcgtcacagcacaagagccaccgtgaccgcgag
cacaaaggaaacggcaaggcacggtccaaagagaaggcttgtaggaaggcctgcattgta
ccctcctccaagcccaagcagagggccaagattgggaaaattgtcatcaagattggaaag
aagaaaaagcgaaagcctgagtcttcagaggaggagtcggacgatgaccctccccctcga
cacacttcgaaaaatgactctaagaggagatctaatcgccaggtgaagaaaaagaagtac
gccgaggagctggaggccaggttgtcagatgaagaagtcaaggttattgtcaaggccaag
aaaagcaacactgcagcatccaaggagcctgctcttcaactctttgtagagaatcccagt
gaagaggatgctgctgttgttgacaaaatcatgtcttctcgtgtcattaagaaggaggtc
tctccaggagttgtggtcgaagtggaagagttttttgtaaaatacaaaaactactcctac
ctacactgcgagtgggccacagagcagcagctggtgaaggacaagaggattcagctgaag
atcaaacgcttcaagatgaaacaagcacagagggcactcttctttgcagatatggaggag
gacgccttcaaccctgactatgtagaggtagacagagtgctggaggtgtcgtattgtgaa
gacaaagacacaggagaggaggtggtgtactacctggtgaagtggtgctctctgccttat
gaggacagcacctgggaactaaaggacgacgtcgatcagagcaagattgaagagtttgag
cggctgcaggcagtcaaggcagactcgcgcagggtggagcgaccccccgccaatctgtgg
aagaagagggagcagtcgagggcatacaggaatggcaacagcctcagggattaccagcta
gaaggggtcaactggctcctcttcaactggtacaacagacggaactgcatcctggcagat
gagatgggcctgggaaagaccatccagtccatcacattcctagaggagatccaccgtgtg
ggcatcaaggggccgttcctcattatcgctccgctctccaccattgccaactgggagcgc
gagttccatacctggacccacctcaatgtgatcgtctaccacgggagcatggtcagcagg
cagatgctccaacagtatgagatgtatttcagggatgcacagggccgtgtgatccgaggg
gcctacaagttccgggctgtcatcaccacatttgagatgatcctggggggctgtcccgaa
ctcaacgccatagagtggcgctgtgttatcatcgatgaggcccaccgcctcaagaacaag
aactgcaagctgctggagggcttcaagctcatgaacctggagcacaaggtcctgctgact
ggcactcctctccagaacacggtggaggagctgttcagcctgctccacttcctggagcct
gcacgcttcccctcagaaaacaccttcatgcaggagtttggagaccttaagactgaggag
caggtgcagaagcttcagggcatcctgaagcccatgatgctgcgccggttgaaggaggat
gtggagaagaagttggctcccaaagaggaaaccatcatcgaggttgagctcaccaatatt
cagaagaagtactaccgtgccattctggagaaaaacttctctttcctggccaaaggagct
ggccaggcaaatatgcccaatctggtcaacactatgatggagctgagaaagtgctgcaac
cacccctacctcatcaaaggggcagaagagaagatcctcgaggacttcagggaagtttat
agccccactgccatcgactttcacctgcaggccatggtgcagtcggccgggaagctggtc
ctcatcgacaaactgctgcctaagatgaaggccggagggcacaaggtgctcatcttctcc
caaatggtgcgctgcctggacatcttggaagactacctcattcagagaaggtacttgtac
gagcggatagatggacgtgttcgtgggaatctgcggcaggccgccatcgaccgcttcagt
aagcctgactcggaccgctttgttttcctactgtgtacaagagccggtgggctgggaatc
aacctcacagcagctgacacctgcatcatctttgactctgactggaacccacagaacgac
ctgcaggcccaggctcgctgccaccggattggtcagaacaaggcagtgaaggtctaccgt
ctgatcaccaggaactcgtacgagcgagaaatgtttgatcgcgccagtctcaagttgggt
ctggacaaagcagtgttgcagagcatgagtggccgagataacagcctgggaggaggcgcc
gggggaggggcagtgcagcagcagctgtcgaagaaggagatagaggatctgttgcgacgt
ggtgcttatggggccatcatggacgaggaggacgaaggggcaaaattctgtgaggaggac
atcgaccagatcctccagcgcaggacaaagaccatcaccattgagtctgagggacgggga
tccaccttcgctaaggcaagttttgtggcatctggaaaccgcacagacatttctctggat
gaccccaacttctgggacaagtgggccaaaaaggctgaccttgatatggatatggtcaat
ggcagaaacagtttggtgatcgatactcctcgtgtcagaaaacagacgaggccgttcagc
gccaccaaggatgagctggcagagctttcagagggagggagcgacagcgacgacaccaaa
cctaagctccggcgaaaccacgaccgcctcaacagctacggacgcacggagtgcttcaga
gtggagaagaacctgcttgtatatgggtggggtcgttggaaggacattctcaaccatggg
cgttttaagaagcagcttacagagagggatgtggagtcaatctgcagggctctactctcc
tactgcctggtccattaccgtggagacgacaaaatcaaaagcttcatgtgggacctgatt
gcccctacggaggacggacaaaccaaggagctgcagaatcacctgggtttatctgcccca
gtccctcggggcaggaagggtaagaagatgaagacacagtccagctcttttgacatccac
aaagccgagtggcttaggaaacacaacccagagcacatgcttcaggacgacggctacaaa
aaacacctcaaacaccactgcaacaaggtgctgctcagggtcagaatgctctactacctg
aaacaagaggtgataggaagccaggcccagaatgtgctagacggcgtggactccagtgag
ataaagatttgggttccagatcccgaccattcagagctgccagccctgtggtgggatgct
atctgcgacaagtgtctgctgctgggtatttataagcatggttatgagaagtacaacacc
atccgtgcagaccctaccctgtgcttcctagaccgcgtgggacgaccggatgagaaggcc
atcgctgctgaacagagaagcaatgattttatggatggggatgtggatgatccagaatac
aagcctgctccagctctgctgaaggacgagatggaggatgatgcctcttctcctggagac
ttagttgtcactgacaacgctggagatgcagctccagtgactgaaggtcaaactgccttc
tggccctcgtccccggtgttgacagcccggctgaggcgtctgatcacagcctcccagcgc
ttcaccaagagccggcagatcctcagcatccaccaggctcaatctcagtcacagtcccag
ccgaccatgatactggctgctccgctttgcccactgccccctacactcaacgataccctc
aatcccaaaatggctgctaagattgaacgccagcaaaggtggaccaggcgagaagaagct
gacttctaccgggtggtctccacttttggtgtcgtttttgacccaaaccttggccggttc
gactggaccaagttcagggccatggctcggctgcacaagaagaccgacgagagcctgcag
aaatacctgtgtgcttttgccgccatgtgccgacgggtgtgccgcctgccgcccaaagag
ggagactctgcggcggacccgtctctcaccatccagcccatcacggaggagcgagcctcc
cgcaccctgtacagggtagagctgcttcgccaggtgagggaacaagtccttcgacattcg
tcgctctatgagcgcctcccgctgtgccagatgagctctgacttgcccgtctggtgggaa
gcgggtacccacgaccgggacctgctagttggtgcggccaagcacggcgtgagccgcaca
gattaccacattctgagagaccctgagctcagcttcatggctgcccagcgcaactacagc
caaacaaaaggtgcacagcagcaatcacgcacatcaaccccactcctccaccctcagcac
caggccaccagctcagtgttgactggctctccactgcctccggtggcccagagagacaca
gagccctgtggggttgtgcccaaagtggaacccgcctcagagggggaggagagcagggag
gagagcagggagaatcgaggcgagagctggagcccccctcgagcgccagctactcccaca
ggtctggaagagaagcctgttttggagacgagggacaatgagaggcaaatggtggcggca
cgaaccaaacccctcacacccaactcctcagagaggaaacccaagaaggccagcaagagg
ggccgcagggaggccaggcgtggctcagactctcactcggggggctcctcctccagctct
tcgtcgcgctcctcctcctcttcgtcgtcctcctcttcctcctcgtcacattccgggtcc
agctcctcctcttcttcttcatcttgcacctccggctcttcgtcgtcctcctcctcctcc
tcatcttcttctgatgacagcgaaagtgagggagaggaagggaagaagaaagtgcctgca
gcaacgagtgtaaagggctttgatgaggacagtgtggcgtctctgagcacaacacaggat
gaactacaagacacccacgtggctgagaatggcatcgcccacaactcctcgcatcctttc
cagggaggaggatacatgctcgctgcgtcctactggccaaaggatcgcgtgattatcaac
cgcctggacagcatctgccaggcagtgctgaagggcaagtggccgggaacacgtcgggtc
tatgagcctggaggcgcagtggcctccttctacaccaccaagctgctggacaacgccaac
agcctctgcgaggacccctctgcctcgcctcaggggtcaaaggtgaccaagcatgttgca
gaaaacaaggagttctcagtaaaactcaacgatgagggaggtctgaagttgaccttccag
aaacagggtctacctctgaagaggcccctggagtccgaggagggcccccaggcccagcag
cagtacctggcccggcttcacgaactgcaaagcgcctcggacacgggcctggctgacatc
accaagcctcagtgcagctttcagactgtgcctccggttcttactggtcagatgaggctg
aacggcatactggacggccaacccgtcgtcaagaagcgaaggggaaggaggaagaatgtc
gagggaatggacctgctcttcatgaacagcagtagagttcctgctgtgcctgatcagttg
cctccaggttggggtggtattggccaggtgggaatggctgcggcccctgcaccatgctac
agccagagctccagtcaggtccctggagacactgagagcagggtcccggtcatcaacctc
aaagatggcacccggcttgctggggatgacgctcccaggaggacagatctagaacagtgg
ctgaaagagcacccaggctttgtagctgacacgggagcctatattcccggggtaaataag
atgcagatgcagttccacttccaggacggtcggcccaagcagaagaggcaccgctgtagg
aaccccaacaagatcgacgtcaacagcctgacgggagaggagagggtccaaatcatcaac
aggagaaatgctcgcaaggttggtggggcctttgctccccctctgaaggatctgtgcagg
ttccttcaggagaacccagagtacggagtcccaccggaatgggcagatgtggtcaaacag
tcgggctacctcccagagagtatgttcgacaggatcctgaccggacccatcgttcctgag
gaggtgagccgacgtggacgccggcccaagaaccctctggccaaggcgtcggcatcagca
gggtcacctgcagcagcagcagcagcggcctctgccctcggtctgaaccccctgctggcc
aacggcctgctctctggaatggacctccccagcctgcaggccttccagcaaaacctccag
agcttacaatccctgcagctcaccgctggcctgatggggctgccgtccgatgctagcaac
ctggccgcaagcaacttagctgccatgtttcccatgatgctgtccgggatggctggattg
cccaatctgcttggcatgagcagcatgcttgggaagccggctcaggagggcacaggaggc
ttggaggaaaagacagagggaaccagcagcggtgcaggaggagaaccatctgcctcgaaa
gccccttctcacacctcagacaccaaaggagaaaggacagagagctcaaacatgactcct
tcctccgcctccggctccagttccttcgccactgccccacaaagtgcttcagctgcctcc
gcagcctccagtcacccactgtctcttaaccccttgttactctccagtatgctttaccca
gggatgctcctcactccaggccttaacctccctgtgtctgccgcacagccgcagggctca
aacagtgaccccaccttccctcccgctcctcttccttctccgtctgcagcctccaagtca
tccccacgggaggcaaggcagccggcggctgccagggaagaagaggaggaggaggacgag
gcgttagaagaggctttggacaacgaagaggaagaggacgagtcggctgaacaaaaagag
aacagtggtcctgaagggaaagccgagacgtcttcatccgagtccgggagctcgtcctcc
tcctcagatgattcagactccagtgatgaggactga
DBGET
integrated database retrieval system
