Scophthalmus maximus (turbot): 118302678
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Entry
118302678 CDS
T09850
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118302678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118302678
03036 Chromosome and associated proteins [BR:
smau03036
]
118302678
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118302678
Coactivators
SAGA/TFTC/STAGA complex
118302678
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
118302678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
118302678
NCBI-ProteinID:
XP_035484905
LinkDB
All DBs
Position
4:21155550..21238400
Genome browser
AA seq
1137 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLSGQSNPASKTDENGGAGSVAPANHLSGK
TLPAPLGTTTLDQQQQQQPRRRNKPEMRQEVNSNDVGADATVTPPVRGCCAPPGEPAAAP
APVCANAAGGGASRSHGASITTPTAAGVPTPASPPASVGISMSTAAGRGSKVAAPGTAGE
TSTEANPARKRIAAPRRSASSRARSFNGAAVTTRRNSSSSSSSVAVADGAGSVDPSAAAT
NSSRPVTSSINTSTFTVSNASLPVGQSAIALDRGTPTIALHRLPSHIVASIAQNGNGTSV
SALVQQGAGAAPGASSPAPLENHSKAGADPGASRTDECQSKIAMSSQSVGVNSVVTTVPP
APSVATPTTTTAAGATTTTTVTRPLSSATATACGTVLATSPACGTVLATSPACGTVLATS
PACGTVLATSPACGTVLATSPACGTGLATSPACGPGQTTSVTSTVSTVRPSAPSPSPAGA
TSQPRPGLPAPQRVVAPQLIVRPPQQQTTIQLPPGFTIPPGMVLVRTELGQLVMVPQQAL
AQAQAQAQAQAQNNISPRPATPTTGTSFRVTTPQSAVTSQANRQCPLTPAKMAPSPAPTP
SSPALQTSSSSSSSSSCPALRPKVPVAPAIAVTAPQKTPAVMAPQAPAQAASQPVQPPQT
GVAAPPGASIVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEP
EEFTSRLQAELKSSPQPYLVPFLKKSLPALRLSLLNSQQSLTHPPQPGVKPAPGGIPPAI
VTGPAVRIRHPNSVSTTTGASALPGGTLGHAAAMGVKTAGAVGGQVRMPVVITQSVRAQG
TMGKGGIIQAGKSPMGCAAQISGNQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESAR
ILATNSELVGTHIRSCKDEAFLHPGLLHRRILETAKKYGVSEVPMEAVNFISHATQARLR
TVVEKVSTIAQHRLDSCKDDECYEQSADVRSQLRFFEQLERMEKQRKDEQEREILLKAAK
SRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDSPGATPSGTE
VSGSTAGSPASSTAPSTSSRQYARQRITRVNLRDLIFYMEQERETAHSLLLYRALLK
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctcttttcagaggtggatgaaaaagcc
gtgagcgacctggtgggctcgttggagtcgcagctctccggccaaagcaaccccgcgagc
aaaacggacgaaaacggaggcgctggctccgtggcccccgcgaaccatctctcaggcaaa
acgctaccagctccgctgggcaccacaacactggaccaacaacaacaacaacaaccgcgg
cggcgtaacaaacccgagatgcgccaggaggtcaactccaacgacgtcggtgcggatgcg
actgtcacacctcctgtccggggctgctgcgcgcctcccggcgagcccgccgccgctccg
gctcccgtgtgcgcgaacgcagcgggcggcggcgcgtcgcgatcacatggagcatccatc
acaacaccgaccgctgccggcgtgccgacgccggcgtctccgcccgccagcgtcggcatc
agcatgagcaccgcggccggccgcggctcgaaggtcgctgccccgggcacagcaggcgag
acgtcgacggaggcgaacccggccaggaaacgcatcgccgcgccacggaggagcgcctcg
tcccgggcgaggagcttcaacggcgcggcggtgacgacgaggaggaacagcagcagcagc
agcagcagcgtagcggtggccgacggcgccggctctgtggatcccagtgccgctgcgacg
aactcttctcggccggtgacatcctccatcaacacgtccactttcaccgtgtccaacgcc
agcctgcccgtgggtcagtcggctattgccctggaccgggggactcccaccatcgccctg
cacagactcccgagtcacatcgtggccagtatagcccagaacggcaacgggaccagcgtt
tcggccctggtccagcagggcgctggcgcggcacccggcgcctcctctccggcgccgctg
gagaaccacagcaaggcgggcgcggaccccggggcttccagaacagacgagtgtcagtcc
aaaattgcaatgtcgagtcagtctgtcggtgtgaactctgtcgtgaccactgttccccct
gcaccttctgtggccacgccgacaacgaccacggcagcaggagccacgaccaccacaaca
gtgacccggcctctgagctctgccacggccactgcgtgtggcacagtgctggcgaccagt
cctgcatgtggcacagtgctggcgaccagtcctgcatgtggcacagtgctggcgaccagt
cctgcatgtggcacagtgctggcgaccagtcctgcatgtggcacagtgctggcgaccagt
cctgcatgtggcacagggctggcgaccagtccagcgtgtggccctggtcagaccacatcg
gtgaccagcactgtgagcacggtcaggccctcggctccctcgccatcacctgcgggggcc
acatctcagccccgtcccggactcccggcacctcagagggtcgtagccccccagctgatt
gtcagaccgcctcagcagcagacgaccattcagctgccccctgggttcaccatcccaccg
ggaatggtgcttgtgcgtacggagctcggccagctggtgatggtccctcagcaggctttg
gctcaagctcaggcccaagctcaggcccaggcgcagaacaacatctcccctcgacccgct
acccccaccacgggaacatccttcagagtaacaactccacagtcggctgtgacctctcag
gccaacaggcagtgtcctttgactccagccaagatggccccatctcccgctcccactcct
tccagccctgccctccagacctcctcctcttcctcttcttcctcttcctgtccggcgctc
cgcccaaaggtccccgtggcgccagccattgctgtgacggctccgcagaagacccccgca
gtgatggcgccccaggccccggcccaggccgcctcccagccagtgcagcctccgcagacg
ggcgtcgcagcgccccccggagcttctatcgtgtcccaggagatgcaagaaaatgtgaag
aagtgtaagaatttcctggccacactaatcaagctggcgtctcacaactctccgtccccc
gagacctccaagaacgtgaagtctctggttcaggacctgctggatgctaagattgagccg
gaggagttcaccagccggctgcaggctgagctcaagtcgtcgccgcagccttacctggtg
ccctttctcaagaagagcctgccggccttgaggctgtctttgctgaatagtcaacagtcc
ctgacccaccccccgcagccgggagtcaaaccggcacccggcggcatccctcctgccatt
gtgactgggccagctgtccgcatacgccatcctaatagcgtcagcaccactacgggtgcc
agcgcgctgcccggcgggacgctcggacatgcagctgccatgggcgtgaagacagcgggc
gctgtcggtggccaggtgcggatgcccgtggtgatcacacagtctgtcagagcacaaggc
acaatggggaagggaggcatcatccaggcaggcaaaagtcccatgggctgcgctgctcag
atctctgggaatcagaaaaacaagctcaacgaccccggaggaggctctttcagggatgat
gatgacatcaatgacgtggcgtccatggccggggtgaacctgaacgaggagagcgcaaga
atactcgccaccaactcggagctcgtgggaacgcacatccggtcgtgtaaagacgaggcc
tttctccacccgggactgctgcaccgacgaattctggaaaccgctaagaagtatggagtc
tcagaggtccccatggaggccgtgaacttcatctcacacgctacacaggcacgacttcgc
actgtggtagaaaaagtttctactatcgcacagcatcgactggactcttgtaaggatgat
gagtgctacgagcagtctgcagacgttcgctctcagctccgcttcttcgagcagctggag
agaatggagaagcagaggaaggacgagcaggaaagagagatcctgttgaaagccgctaaa
agtcgctccaggcaagaggacccagagcaagcgcgactgaaacagaaagctaaggagatg
caacaacaggaactggcacagatgaggcagcgagatgccaacctcacagcactagctgcc
attggaccccgcaaaaaacgtaaggtggattcaccaggggccaccccatcagggaccgag
gtttcaggcagcacggcgggttccccggccagctccaccgccccgtccacctcgtcgcgc
cagtacgcgcggcaacgcatcactcgcgtcaacctcagggacttaatcttctacatggag
caggagagagagaccgcccactccctcctcctgtaccgtgccctgctcaagtag
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