Scophthalmus maximus (turbot): 118302911
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Entry
118302911 CDS
T09850
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smau03000
]
118302911
Transcription factors [BR:
smau03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118302911
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
118302911
NCBI-ProteinID:
XP_035485333
EnsemblRapid:
ENSSMAG00025017954
LinkDB
All DBs
Position
4:11217486..11347902
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AA seq
779 aa
AA seq
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MEGFLRSSFLLSRVMSSKQATSPFASVVDGDDAMSQEHLSWEKEESAEAHGTPQLPLHSL
LHGTANPDEQRPLSSIPPESDWDSLVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGAR
ERSDLLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDESSCMETLLSKDWKEKME
RLNTSELLADVKGTPESLAEKEHQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQ
MELARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQ
QGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPP
LPQPLGASGPISPSSLKNDKSSSSPITQVKEEGTQPLNLSARPKTSELIKSPTSPTQSLF
PGSKNSPNSLLGKGGLPSPLGGLGRGSSLDILSSLNSTALFGDQDTVMKAIQEARKMREQ
IQREQLQHHQQGMEAKLSALSSVGLNNCRVDKERAHYESIGHHLGKLGEDGKIGHRVIDL
TRPEDLDGGAGSTEARVFREARGRNNNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSN
ISKILGSRWKSMTNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPKRTCIIDGKKLRIGEY
KQMMRSRRQEMRQFFTVGQPPQLPITTSASMVYPGAITMATTTPSPQMTSECSSASASPE
PSIPVIQTAYNMKLEPNTMANNSEPVNGVDEMDMYEDFEDEPKSDYSSENETQEPVNAN
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggagggctttctacgtagcagctttttactgagcagagtcatgtcttccaagcaggcc
acgtctcccttcgcctccgtggttgatggagatgacgccatgagtcaagaacacttgtct
tgggagaaagaggagagtgccgaggcccacggaacaccacagctgcccctgcacagcctg
ctccatgggacagccaaccccgatgaacagcggccactcagcagcataccgccagagagc
gactgggacagcctggtgtcagcccaacagcgtatggaatctgacagcaataaagtatgt
tccctgtactccttccggaacaattctacttcaccacataagccggaggagggggcccgg
gagcgaagcgacctgctgagcggatcagcgtttggaactcccgagcgccgcaaaggaagc
ctggcagatgtggttgacacgctgaagcagaagaaactggaggagatgacaaagacagag
caagacgaatcctcatgcatggagacacttctttctaaagactggaaagagaagatggag
aggctcaacaccagtgaacttttagcagatgtaaaaggtactccagagagcctggcagaa
aaggaacaccagctctccacgatgatcacccagctcatcagcctgcgagagcagctcctg
gctgcccacgacgaacagaagaagctcgccgcctcacagatggagaaacagaggcagcaa
atggagttggctcgtcagcagcaggagcagattgcgagacaacagcagcagcttctgcag
cagcagcacaaaatcaacctcctccagcagcagatccaggtccagggtcacatgcctccg
ctcatgatccccatttttccacacgaccaacgcaccctggcagcagccgccgccgcccag
caaggctttctcttccccccaggaatgtcttacaagccaggtgataactacccggtgcag
ttcattccatccacaatggcagctgcagcagcgtcaggactcagccccctccagcttcag
caactgtatgcggcccagctcgccagcatgcaggtctctcctggagccaagatgcctccg
ctcccccagcccctcggtgcaagtgggcccatttctccctcctctctgaagaatgacaag
agttcctccagccccatcactcaagtcaaggaggaaggaacacagccgctcaacctgtct
gctcggccaaagacgtcagaactgatcaaatcccccacatccccgacacagagcctgttc
cctggcagtaaaaacagccccaacagtctcctcggaaagggtggcctccccagcccactt
ggaggcctgggacggggctcatctctggatattctgtccagcctaaactccactgcgctg
ttcggggaccaggacacagtgatgaaggccatccaggaggctcggaaaatgagggagcag
atccagagggaacagctgcaacatcaccagcagggcatggaggcgaagctgtccgccctc
agttcagtgggcctcaataactgcagagttgacaaggagcgggcgcactacgagagcatt
ggacaccacctcggcaagctgggtgaggacgggaagatcggccacagagttattgacctc
accaggcctgaggatctagatggaggtgctggatccactgaggcgagagtcttcagggaa
gctcgaggaaggaacaacaacgaaccccacattaaaaggccaatgaatgctttcatggtg
tgggccaaggacgagcggcgcaagatcctgcaggccttccccgacatgcacaactctaac
ataagcaaaattttgggttctcggtggaagtcaatgacaaaccaggacaagcagccatac
tatgaggagcaagcccgcctgagcaagctccacctagagaagtacccaaactacaagtac
aagccgcggcctaagagaacctgcattattgacggaaaaaaactccgcattggagagtac
aagcagatgatgcggtcaaggcgacaagaaatgaggcagttcttcactgtgggacagcca
ccacagcttcccatcactaccagcgccagtatggtctatcctggggccatcaccatggca
accacgacgccctcacctcagatgacatcagagtgctcgagtgcctcggcgagtcctgag
ccatccattcccgtcattcagaccgcctacaacatgaagctagagcccaacacgatggca
aacaacagtgagccggtcaatggcgtggacgagatggacatgtacgaggattttgaggat
gagcccaaatcagactatagcagtgaaaatgaaacacaagagccagtcaacgccaactga
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