Scophthalmus maximus (turbot): 118304596
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Entry
118304596 CDS
T09850
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04621
NOD-like receptor signaling pathway
smau05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
118304596 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
118304596 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
smau04054
]
118304596 (nod1)
Pattern recognition receptors [BR:
smau04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
118304596 (nod1)
BRITE hierarchy
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_4
LRR_6
NOD2_WH
AAA_16
AAA_22
RsgA_GTPase
ATPase_2
ABC_tran
AAA_30
Motif
Other DBs
NCBI-GeneID:
118304596
NCBI-ProteinID:
XP_035485564
EnsemblRapid:
ENSSMAG00025007453
LinkDB
All DBs
Position
1:327080..334775
Genome browser
AA seq
939 aa
AA seq
DB search
MDRAEEARCLNILTCHRELLVSKLRSVQCVLDNLLTCGFLCEEDVEIVQRTATKTDQVRK
ILELVQCKGEVACEYFIFILYNVCDAYIDLQPWLTEINFNPSSHMKVMSVVNTDPISRYR
EKLRHEMSRDTCFIMSYGQQEETRLEDLYTDTLMELMNDRNESLGFVESLDQLLGDHAAF
NPQGEIIYVMGDAGVGKSILLQKLQNLWSKQELRTDAIFFFKFRCRMFNLFKDTEEISLR
ELLFKYNCRPDLDPDDEVFDYILRFPEKVIFTFDGYDEIQEDLDLKNAPEVVCPEVRAHP
LQLLVSLLCGKLLKSSQKVLTARTGIELQSRVIRKKVALLGFSSSHLKTYIDLHFKEQEH
RKLVSVQLDASPHLCGLCSTPLFCWIVFRSFRHLHAMHDRFTLPDTCITLTDIFLLLSEV
FFSRSTSRAPSLLKKSTRCSSETFKAGLRPLAAFAKLALQGMERGSFICNPEEVTACGLR
EEDLPLGFLKPFSECDASGNPANFEFLHITLQAFLAAFALVLDEQAAADSILKFFTECSR
KRERSCLPFDLCITGSSKQSQKKPFATTDHLQFTNLFLCGLLSKAHTGLLEHLVSPRLLK
KKRALLKSYLSTSIRSHLHGLPHYDGEEGRKVHVLPNFLWMLRCIFETGSKDIAHMTAKG
ITASFIKLGYCNVYSGDCTALNFVLQHRRGLLGVDMDNNNISDYGVKQLRPSFCKMTVVR
LCVNHLSDSSIEVLAEELCKHKVVEVLGLYNNHITDVGAKLVAQIIEECPKLRILKIGKN
KITGVGGRYLARAIQTSTSIFDVGMWGNSIGDEGAEAFAEALRHHPQLTNLSLSANGITS
KGGKCLTDALKENSTLRIFWLVQNELTDDAAPHLAELVKANTGLKHLWLINNQLTVHGVK
HLAEALAHNTALKEICVKGNQLSEEEEKEFVAEKRLFFH
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggcagaagaagccagatgcctgaacatcctgacctgccacagggaactgctg
gtgtccaagctgaggagcgtccagtgcgtcctggacaacctgctgacctgcggcttcctc
tgcgaagaagacgtcgagatcgtgcagcgaactgccaccaagacggatcaggtgcgcaaa
atcctggagcttgtccagtgcaaaggggaggtggcctgtgaatacttcatcttcatcctc
tataatgtgtgtgacgcgtacatcgacctccagccatggctgacggagatcaacttcaac
ccaagcagtcacatgaaggtgatgagcgtcgtcaacacagatcccatcagcaggtataga
gaaaagttgaggcatgaaatgagccgggacacctgtttcatcatgtcgtacggccagcaa
gaggagacccgtctggaggacctctacaccgacacgctgatggagctgatgaacgaccgc
aacgaaagtctgggcttcgtggagagtctggaccaactcctgggagaccacgcggccttc
aacccccagggtgaaatcatctatgtgatgggggatgccggtgtgggaaaatccatcctc
cttcagaagctccagaatctctggtccaagcaagagctacggacagatgccatcttcttt
ttcaagtttcgctgtaggatgttcaaccttttcaaggacacggaagagatctccctcagg
gaacttttgttcaaatacaactgtcgaccggacctcgacccagatgatgaggtgtttgat
tacatcctgcgcttccctgaaaaggttattttcacatttgacggctacgatgagattcag
gaggatctggacctgaagaatgcccctgaagtggtgtgtccagaagtcagggcgcatccc
ctccagctgctcgtcagcttgctctgtgggaaactactcaagagttcccagaaggtgctg
acggctcggacggggatcgagctccagagtagggtgatcagaaaaaaggtggctctgctg
gggttctcctcgtctcatctgaagacatacatcgacttgcacttcaaggagcaggaacac
agaaagctggtgtcggttcagctggacgcgagcccccacctctgtggcctgtgctccact
ccgctcttctgctggatcgtgttcaggagcttcaggcacctgcacgccatgcacgaccgc
ttcactctgcccgacacctgcatcacgctcaccgacatcttcctcctgctgtccgaggtg
ttcttcagccgctcgacatcacgtgctccatctctgctgaagaagagcacccggtgttcc
tcggagacattcaaagcggggcttcggccccttgctgcatttgccaagctggcgcttcag
ggtatggagagaggcagcttcatttgtaacccagaggaggtcactgcgtgtggtctcaga
gaggaggacctgcccctgggctttctcaaacctttcagcgagtgcgacgccagtggaaac
cccgctaactttgaattcctccacatcaccctccaggctttcttggcggcatttgctctt
gtgttggatgagcaggctgctgcagactccattctcaagttcttcacagagtgcagcagg
aaaagggaacggtcctgtctgccttttgacctctgcatcaccggctcctcaaagcagagc
caaaagaaaccatttgcgactactgaccaccttcagttcaccaatctcttcttgtgcgga
ctgctgtccaaggctcacactggtctactggagcatctggtgtctcccagattgctgaag
aaaaaacgggccttgttaaaatcttacctgtccactagtattaggtcccacctgcatggc
ttaccccactacgatggcgaggaaggcaggaaagttcacgttttgccaaacttcctgtgg
atgctgaggtgcatcttcgagacggggagcaaagacatcgctcatatgacagcgaaaggc
atcacggctagcttcatcaagctgggctactgcaacgtgtactcgggcgactgcactgcc
ctcaactttgtactgcaacaccgccggggactactgggcgtcgacatggacaacaacaac
atcagtgactacggggtgaagcagctgaggccttcgttctgtaagatgactgtggtgaga
ttgtgcgtcaatcacctgtcagacagcagcattgaggttcttgcagaggagctgtgtaag
cacaaagttgtggaggtcttgggactttacaacaatcacatcacagatgttggagccaag
ctcgttgctcagataattgaggaatgtccaaagttgcgaattctcaagattggtaaaaac
aagatcaccggtgttggtggcaggtatctggcccgtgcgattcagacgagcacctctata
tttgatgtgggaatgtgggggaacagcatcggtgatgaaggcgcggaagcgttcgcggaa
gctttgaggcaccacccacagctcaccaacctcagtctctcggcgaatggcatcacatca
aaaggagggaaatgtctgacagacgcactgaaggagaacagcacactcaggatcttctgg
ttggtgcagaacgagttgaccgatgacgcagcgccacacctggctgagctggtgaaagcg
aacacgggtttaaaacacctctggttaatcaacaaccagttgacggtacacggggtcaaa
catctcgccgaggccctcgctcacaacacggcactcaaagagatatgcgtgaaaggaaac
cagctctctgaggaggaggagaaagagtttgtggcagagaaaaggcttttcttccactga
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integrated database retrieval system
