Scophthalmus maximus (turbot): 118304899
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Entry
118304899 CDS
T09850
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smau04147
]
118304899
00535 Proteoglycans [BR:
smau00535
]
118304899
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118304899
Exosome [BR:
smau04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118304899
Proteoglycans [BR:
smau00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118304899
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118304899
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
118304899
NCBI-ProteinID:
XP_035485585
LinkDB
All DBs
Position
1:21072120..21105763
Genome browser
AA seq
1520 aa
AA seq
DB search
MVLTGDEVLPSNLTGDVFKTNGTFEGVLDSSLTPADSRSNASDPRCLPVPSHWPICVGKR
PTFFTLPNFFNHTSVAEVGAVLQEWAWLARAGCHHGTEWFLCLLLAPRCSSPPAALHLPC
RGFCHVLQDSCWASLENGRLPVECRLLPERAEKPPCASVSNWKEESGVSLLQLIGDLQPG
EITRVYGPRGEAAYAFTSATASGQPALAHIPNPFYRHFSLLFHIKPTTPAASVLFSITDG
PQRLMYVAVKLSAVQSGRQRVQFFYTEPDSEASYEAASFDVPSMVDTWSRFSLSVFEDRV
TFYHGCDSEQQVVKFERSPDPMELDTGAGIFVGHGGGADADKFQGEIAELKVVGNPRAAE
HLCDDEDDSDAASGDFGSGDGESRQTGHTVKTTPAPLRPVPEPPLISSKGTRLKETGPGG
GKGEKGDRGEMGFKGDRGPAGPKGDSGSSSGSGVSSQGGERGLKGDKGAKGSSGFGYPGN
KGERGAKGPAGPPGPPGPAAEVVRLGDGSVVQQVAGPIGPPGQPGLNGAAGPSGADGEPG
DPGEDGKAGPAGPQGVPGSPGTPGSNGQKGERGEGQPGPRGPPGLPGPPGPGTGDRPTFV
DMEGSGFPDLDKIQGLPGPPGPPGPPGIPGTSVAMGSNGPIAFGPPGPPGQDGVPGLPGR
PGPPGAPGITGLRGQKGDCAELGLPGAVGEKQHTQDSNPFTTLFSYFAPSSTGSQGDPGH
TGQPGQTGLAGLPGPMGPVGPPGPPGPPGQPYGVSHSDQDGYVLTNALPGLTGPPGPQGP
PGIAGLPGKPGFPGNHGDKGAEGARGQPGFPGLDGFRGQSGEKGERGEKGDMGLPGRDGG
SPGPPGLPGPPGEIVYQPTGDYNDVDWNQGWQGGAGIPGRAGFPGPVGPKGDRGDAGLPG
YAPKGQKGEPGIVMGPNGTPMYLGNLAGQPGDMGPPGPVGPPGSYGPEGQKGEIGFPGRP
GRPGLNGVKGEKGDSGSGSEYGYPGAPGPPGPPGPPGPPSSIDGLRGYEDYARHYPAVKG
EKGDTGPPGLLQIPGSGSTYDIYTLKNELKGEVGSPGFKGEKGEPGGGYYDPRFGASEVG
APGVPGPPGPQGDSIVGPPGPQGPTGAPGRGYDGRPGPPGPPGPPGPYISGSHRGTQTIS
IPGPPGPPGVPGLPAHSSGVTVLRTYDTMTATARRQPEGSLVYILDRTDLYLRVRDGVRQ
VQLGSYIALPREDGNEVAAVEPPPVVPYSPDHHSHIDFQSPPDSHSQSQPDGHHPTHTEP
RYPSNPDPRYTTHPDPRYQPDPRYPAQTDPRFPSYTERQNQPDGRYSVHTTQDRPAHPDS
RYAVTPQRRPPPPVPHIPVHHHASGPGLHLIALNSPQTGSMRGIRGADFLCFTQAQAIGM
KGTFRAFLSARLQHLNSIVRKADRGRLPIVNLKDEVLFDNWDAIFTDGRMKDNVPIYSFS
GKNVLSDSTWPEKMMWHGSNSDGQQHADGFCETWRVDDRALTGMASSLQRGSLLQQSSSS
CSSSYVVLCIENSYIGHSKR
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atggttttgacaggtgatgaagtcctgcctagcaatttaactggtgacgtttttaaaacg
aatgggacttttgagggtgttctggattcgtcgctaacccccgcagatagtcgcagcaat
gcttctgacccacgttgtctccccgtgccctctcattggcccatttgtgtgggcaaacgg
cccacgtttttcacgctgcccaactttttcaaccacacgtctgtggcagaggtgggcgcg
gtcctacaggagtgggcatggctggcgagggcagggtgtcaccacggcacagagtggttc
ctctgccttctgctggcgcccaggtgctcctcgccccctgctgccttgcacctgccctgt
cgcggcttctgccacgttctgcaggacagctgctgggcgtccctggaaaacgggcgtctc
ccggtggagtgtcgcctcctgcctgaaagagcggagaagcccccgtgcgcgtcagttagt
aactggaaagaggagagcggcgtctccttgctgcagctgataggagaccttcaaccgggt
gagatcacaagggtctacgggccaagaggggaggccgcctatgccttcacctcggcgacg
gcgtcgggccagccggccctggcccacattcccaacccattctaccgccacttctccctc
ctcttccacatcaagccaaccacacccgccgcctccgtcctcttttccatcacagacggg
ccccagaggctcatgtacgtggctgtcaagctcagcgcggtgcagtctggccgccagagg
gtgcagttcttctacaccgagcccgactctgaggcctcgtacgaggctgccagctttgac
gtcccgagcatggtggacacctggagtcgcttttcgctgtccgtcttcgaggaccgggtg
actttctaccacggctgcgactctgagcagcaggtggtgaagtttgagcgttccccagac
cccatggagcttgacacgggggcggggatattcgttggccacggtggaggagctgacgct
gacaagttccagggggagatcgctgagctaaaagtggtgggaaaccctcgggcagctgaa
catttgtgcgatgacgaggacgactccgatgctgcctctggggacttcggcagcggcgat
ggcgagagcagacaaacgggacacactgtgaagaccacccctgcacccttacgtccagta
cctgagccgccgctgatatcctcaaaaggaaccagactgaaggagacaggtcccggtggt
gggaaaggtgagaaaggtgacagaggggagatgggcttcaagggggacagaggccccgcg
gggccgaagggagattcggggtccagctctggctctggcgtctcctctcagggcggagaa
cgaggactgaagggggataaaggtgcaaagggaagttctggctttggataccctgggaat
aaaggagaacgtggggctaaggggcccgccgggccccctggtcctcctggccctgcagct
gaggtggtccgactcggggacggctctgttgtgcagcaggtggctggacccatcggacct
ccgggacagccagggttgaatggtgccgcaggaccttcgggagctgatggggagcctggc
gatccaggagaggatggaaaagctggtcctgctgggccacaaggtgtcccaggaagtcca
ggaacacctggttctaacggccaaaagggtgagcgtggagaaggccaaccaggacccaga
ggacccccaggtctaccaggacctcctggacccggcactggtgatcgcccaacatttgtt
gacatggagggctcaggattcccggacttggacaaaatccagggtctccctggtccccct
ggtcctcctggccctcccgggatccctggtacttcagtggcaatgggctcaaatggtccc
atagccttcggacctcctgggccccctggacaagatggagtccctggtctgcctggccgt
cctggtcctcctggtgcacctggtattaccggcctgagaggacaaaagggtgactgtgct
gagctcggtcttccaggagcagttggcgaaaagcaacacacgcaagactccaaccctttc
accaccctgttctcttactttgctccatcctctacgggttctcagggcgacccaggacat
acgggtcaaccagggcagacagggcttgcagggctcccaggccccatgggaccagttgga
cctccaggtccgcccggacccccggggcaaccttacggcgttagccatagtgaccaggat
ggctatgtgctgaccaatgccctgcctggactcacaggcccacctggaccacagggtcca
cctggtattgcaggtttacctggtaagccaggtttcccaggcaaccatggagacaaagga
gcagagggagcaagaggacaacctggttttccaggcttggatggattccgggggcagtcg
ggagaaaagggagaaagaggagagaaaggcgacatgggtctgccagggcgagatggtgga
tcacctggccctccagggctccccggacctccaggagagatcgtctaccagccgacaggc
gattataacgacgtagattggaaccaagggtggcagggaggagctggtattccaggtcgt
gcaggattcccggggcccgtaggaccaaaaggagacaggggagatgcaggccttccagga
tatgcacctaagggacaaaaaggagagcctggtatcgtcatggggcctaatgggacacct
atgtacctgggaaacctggcaggacagccgggtgacatgggaccccctggcccagtggga
cctccggggtcatatggtcctgaaggccagaagggagagatcgggtttccaggacgacca
ggccgacctgggctgaatggcgtcaaaggagagaagggagattcgggcagtggatctgaa
tatggataccctggtgctccgggtccaccaggcccccctggacctcctggacctccttct
agcatcgacggactcagaggatacgaggattatgccagacactatcccgctgtcaaagga
gagaaaggtgacactggaccaccgggattacttcaaataccagggagcgggtccacctat
gacatatacactttaaagaatgagttgaaaggtgaagtgggcagtcctggcttcaaagga
gagaaaggagaaccaggaggaggatattatgacccacgctttggagcgagtgaagtcgga
gcgccaggagtgcctggacctccgggccctcaaggtgactccatcgttggcccaccaggt
cctcaggggccaactggtgcaccaggaagaggctacgatgggcggcctgggccacccggg
ccacctgggcccccaggaccctatatatctggatctcacagaggcacacagacgatcagt
attcctgggccaccggggccacctggagtgcccggactacctgcacattcctctggggtg
accgtgttgaggacttatgatacaatgacagccaccgctagaagacaacctgagggctct
ctggtatacattttggaccgaacagatctgtacttacgggtcagagacggagttcgacaa
gtccagcttggaagctacattgctttgccccgcgaggatggtaatgaggttgcagccgtg
gagcccccacccgtcgtcccctactccccagatcaccactcccacattgacttccaaagc
ccacccgacagtcacagtcagtcacagcccgacgggcaccatccgacacacacagagccg
cgatacccgtcaaaccctgatccaagatacacaacccaccctgacccgcgctatcagccc
gatccgcggtacccagctcaaacagatccaaggtttccaagttacacagaaagacaaaac
caaccagatggtaggtattctgtccatactacccaggaccgccccgcacacccggacagt
cgctatgcagtcacccctcagcgaagacctcctcctcctgtgccccacattccagtccac
catcacgcttcaggtccagggctccacctgatcgccctgaacagccctcagactggctcc
atgagggggatccgcggtgcagactttctgtgcttcacccaggctcaggccattggcatg
aagggaactttccgggctttcctgtctgccagactccagcatctcaacagcatcgtccgc
aaggcagacaggggccgtttgccaatagtcaacctgaaggatgaggtgctgttcgacaat
tgggacgccatcttcaccgatggcagaatgaaggataacgtgccgatctactccttcagt
ggcaagaatgttctcagtgacagcacatggccagagaagatgatgtggcacgggtcaaac
agtgacggtcagcagcacgccgacggcttctgcgagacgtggcgcgtggacgaccgggcg
cttaccggcatggcgtcgtcgctgcagcgcggcagtttgctccagcagagctcaagcagc
tgctccagctcctacgtcgtgctgtgcatcgagaacagctacatcggccactctaagaga
tag
DBGET
integrated database retrieval system
