Scophthalmus maximus (turbot): 118308857
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Entry
118308857 CDS
T09850
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04510
Focal adhesion
smau04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118308857 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118308857 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118308857 (col2a1b)
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118308857 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
118308857
NCBI-ProteinID:
XP_035486179
LinkDB
All DBs
Position
6:complement(9465974..9571427)
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AA seq
1491 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVCLVAVVRCQEEDDQEDIFSCMQDGQGYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADPSTPIGVPGAKGQKGEPGDITDVV
GPRGPHGPMGPPGEQGARGARGDKGEKGTLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQS
GPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGALGAKGESGSTGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIN
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEFGPG
GLQGPHGPQGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKGGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEGGKSGEKGLGGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGITGPRGERGFPGERGAAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGAGGSQGPPGLQGMPGERGGAGIPGPKGDRGDIGEKGPE
GASGKDGGRGLTGPIGPPGPSGPNGEKGESGPAGPSGAAGTRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGPSGAPGEK
GDAGEDGPPGPLGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGSGDR
GPPGPVGPPGLTGPAGEPGREGNSGSDGPPGRDGSTGIKGDRGTTGPAGAPGAPGGPGAP
GPVGPTGKQGDRGESGAQGPSGSPGPAGARGMPGPQGPRGDKGEGGEGGERGQKGHRGFT
GLQGLPGPPGQSGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGET
GPSGPPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVSSKPSNIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGQVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattccaggactgtactgctgctcgtagcaacccaggtctgcctc
gtagccgttgtgagatgtcaggaggaggacgaccaggaggatatatttagctgtatgcaa
gacggacagggctatagtgacaaggacgtatggaagccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgcgatgaaattgtctgcgaggagctaaaagactgcccc
aaacccgaaatcccattcggagagtgttgccccatctgcgcagctgacccatctacgccc
atcggagtacccggtgctaagggtcagaaaggcgaacccggagacattaccgatgttgta
ggaccaagaggaccacatggcccgatgggcccgccaggagagcaaggagcccgaggagca
agaggagataagggagagaagggaacccttgggccccgtggcagagatggtgagcctggc
acccccggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgcagctcagatggctggtggctttgacgagaagtccggcggcgcacagatg
ggtgtgatgcaaggaccaatgggcccgatgggacccagaggaccacctggcccctccgga
tcacctggcccacaaggtttccagggcaacccaggagaggcgggagagcccggacaatct
ggccccatgggtccccgtggcccccctggaccttctggaaaacctggagatgatggtgaa
gctggaaaacctggaaaatcaggcgagcgtggaccttccggacctcagggagctcgtgga
ttcccaggaaccccgggcctgcccggcatcaagggacacagaggttatccaggtctcgat
ggtgcaaagggagagaccggagctcttggtgctaagggtgagtctggttctaccggagag
aatggcgcccctggaccgatgggaccccgtggtttgcccggtgagagaggacgtcctgga
cccagtggagtggctggagcacgtggaaacgatggcttgcccggccctgctggtcccccc
ggccccgtcggtccttctggagctcccggcttccctggctctcctggttcaaagggagaa
gctggtcctactggtgctcgtggacctgagggtgctcagggacctcgtggagagtcaggc
actcctggatcatctggaccttctggcgcttctggcaaccctggtactgatggtatcaac
ggagctaaaggatcagctggtgctcctggtatcgctggtgctccaggcttcccaggacct
cgtgggcctcccgggcctcagggagcaactggacctctcggccccaaaggaacttctggg
gacccaggtattccagggttcaagggagaggctggacccaaaggagaatttggaccaggt
ggtcttcagggaccacacggcccacaaggagaagagggcaagagaggacccaggggtgag
cccggtgctgctggaccacttggacctcctggagagagaggatcccccggtaacagaggt
ttccctggacaagatggtttggctggtcccaagggagcccccggtgagcgtggaccctcc
ggcgccagtggtcccaagggtgccaacggtgaccccggccgtcctggagagtccggtctg
cctggtgccagaggtctaactggacgacctggtgacgctggtcctcaaggcaaaggtgga
ccttctggagcccctggtgaggatggacgtccaggaccccccggcccacagggagcccgt
ggacagcctggcgtcatgggattccccggacccaagggagcgactggtgagggtggaaag
tctggtgagaaaggactgggtggagctcctggtctgagaggtctgcctggcaaagatgga
gaaactggcgctgctggaccccccggccctgctggccctgctggtgagagaggagagcaa
ggacagcccggaccctccggcttccagggtctgcctggacctcctggcccccctggtgag
ggaggcaagcccggagaccagggtgttcctggagaggctggagctgctggtatcactgga
cccagaggagagcgcggtttccccggagagagaggagcggccggctctcagggtctgcag
ggacccagaggtctgcctggaactcccggaactgacggacccaagggagccattggacct
gccggtgccggtggatctcagggaccccccggtctgcagggtatgccaggagagagagga
ggtgctggcattcctggacctaaaggagacagaggtgacattggagagaaaggacccgaa
ggtgcttccggcaaagacggcggcagaggtctcaccggtcccattggtccccctggtcct
tctggtcccaacggtgagaagggtgaatctggtcctgctggtccttccggagctgccggt
acccgtggtgctcctggtgacaggggtgagaccggacctcctggacctgctggatttgct
ggaccccctggagctgatggtcaacctggaaccaagggagagcagggagaatctggacag
aagggagacgctggtgcccccggaccccaaggaccatctggtgcccctggacctgcaggt
cctacaggtgtttttggacctaaaggtgctcgaggtgctcaaggacctcctggtgccact
ggtttccctggagctgctggccgagttggaccccctggtcccaacggtaaccctggacct
gctggtcctgctggtccctctggcaaagacggacccaagggagtgaggggagatggtgga
cccccaggcagacagggtgatgctggactccgcgggccttctggggctcctggcgagaag
ggagacgctggagaggacggtcctcctggtccccttggtccttcaggtcctcagggtttg
ggtggtcagcgcggtattgtcggtctgccaggccagcgtggtgagagaggtttccctggt
ctgcctggaccttctggtgagcccggaaagcagggagctgctggtggcagcggagaccgt
ggaccccctggacctgttggaccacctggactcaccggacctgcgggagagcctggcaga
gagggcaactctggatctgatggacctcctggcagagacggttctactggaatcaagggt
gatcgtggtaccacgggtcctgctggtgctcctggtgctccaggcggtcccggtgctccc
ggccctgttggtcctactggcaaacagggagacagaggagagtctggtgcacaaggacct
tctggatctccaggacctgctggggccagaggaatgcccggaccccaaggaccccgcggt
gacaaaggtgagggtggagagggcggtgagagaggacagaagggacacagaggcttcacc
ggtctgcagggtctgcctggacctccgggtcaatctggagaccagggtgctactggaccc
gctggaccttctggacagagaggaccacctggacctgttggccctgctggaaaggacggt
tcaaacggtctgccaggacccattggaccccccggacctcgtggtcgcagtggagagacc
ggtccctctggtcctcccggaaacgccggaccccccggtcctcctggtccccccggccct
ggcattgacatgtctgccttcgccggcctgggtcagacagagaagtccccagatcctctc
aggtacatgagggctgaccaggcttccggaaacctccgtcagcacgatgccgaggttgac
gccaccctcaagtctctcaacaaccagattgagaacatccgcagccccgagggatccaag
aagaaccctgctcgcacctgcagagacctgaagctctgccatcccgactggaagagcgga
gagtactggatcgatcccaaccagggctgcactgttgatgctatcaaggtcttctgcaac
atggagacaggagagtcctgcgtctcctccaagccttccaacatccctcgcaagaactgg
tggtccagcaagagcaaagaccgcaaacacgtttggttcggagagacaatgaatggagga
ttccacttcagctatggtgatgacagcctggcgcccaacactgctgccattcagatgacc
ttcctgagactgctgtccaccgaggcttcccaaaacctcacctaccactgcaagaacagc
gtggcatacatggacgcctccgcagggaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggac
ggctgcacgaaacacacgggccagtggggcaagacagtgatcgaatacagatcgcagaag
acctctcgtctccccattgtagacattgccccaatggatattggaggagcagaccaggag
tttggagtcgacgttgggcaagtgtgcttcttgtaa
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