KEGG   Scophthalmus maximus (turbot): 118309079
Entry
118309079         CDS       T09850                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
smau  Scophthalmus maximus (turbot)
Pathway
smau03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:smau00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    118309079 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smau03019]
    118309079 (cstf1)
Messenger RNA biogenesis [BR:smau03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     118309079 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd CSTF1_dimer WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_Aladin WD40_RFWD3 Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_NWD2_C Beta-prop_VPS8 Ge1_WD40 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_WDR11_1st PROPPIN Frtz
Other DBs
NCBI-GeneID: 118309079
NCBI-ProteinID: XP_035486661
UniProt: A0A2U9BHJ3
LinkDB
Position
6:complement(26748035..26760297)
AA seq 431 aa
MYRPKPTLKDRQHLYRLIISQLLYDGYTNIANSLINEVKPPSVVSPSEQLMQLAKIGMEN
DDSAVQYAIGRSDTVAPGVGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQLLASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDVNTFQCFVSCNPLDQHTDTISGVSYNPTANSYVTCSKDGSIKLWDGVSNRCVITF
DKAHDGAEVCSAIFSKNSKYILSSGKDSVVKLWEISTGRTLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtatcgtcccaaaccgacgctgaaggaccgacagcacctgtacaggctcatcatcagc
cagctgctctacgatggatacaccaacatcgccaacagtctcatcaacgaggtcaaacct
ccgagtgtagtgtcgccctctgagcagctgatgcagcttgcaaagatagggatggagaac
gacgacagtgcagttcagtatgccattgggcgctcggatacagtagcacctggagttggt
attgatctggaattcgatgcggacgtccagacaatgtctccagaggcatcagagtatgag
acctgctatgtcacttctcataagggtccttgccgcgtcgccacctacagccgcgatggc
cagctgattgccaccggctctgctgatgcctccatcaagatcctagacaccgagcgcatg
ctggccaagagtgccatgcccattgaggtgatgatgaatgagacggctcagcaaaacatg
gagaatcaccctgtgatccggactctgtacgaccacgttgatgaagtaacctgtcttgcc
ttccatccgactgaacagcttcttgcttctggttcaagagattacaccctcaaactgttt
gactactcaaagccttcagcaaaaagagcgtttaaatatatacaggaagcagaaatgttg
cgttcgatctccttccacccatcaggtgacttccttctggtgggaacgcagcatcccact
cttcgcctctacgatgtcaacaccttccagtgcttcgtgtcctgcaacccactggaccag
cacacggacaccataagcggcgtcagctacaaccccacggccaacagctacgtcacctgc
agcaaggacggcagcatcaagctgtgggatggagtctccaatcgctgtgtgatcaccttc
gacaaagcccatgatggcgctgaggtctgctccgccatcttctccaagaactccaaatac
atcctgtcaagtggcaaagactccgtggtgaagctctgggagatttccacaggccggacg
ctggtcaagtacacaggtgcaggtttgagcggccgtcagatgcatcgcacccagggcgtg
ttcaaccacacggaggactatgtgttgctgccggacgaacgcaccatcagcctgtgctgc
tgggactctcgcacggccgagaggaaaaacctgctgtctctgggacacaacaacattgtg
cgctgcatcgtccactcgcccaccaaccccggcttcatgacctgcagcgatgacttcagg
gcccgcttctggtaccgccgcaccaccacggactga

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