Scophthalmus maximus (turbot): 118309587
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Entry
118309587 CDS
T09850
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smau04121
]
118309587 (pdzrn3b)
Enzymes [BR:
smau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118309587 (pdzrn3b)
Ubiquitin system [BR:
smau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
118309587 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-TRAF
zf-C3HC4_4
Prok-RING_4
Sina_ZnF
PDZ_Tricorn
zf-rbx1
U-box
zf-RING_6
IBR_1
RING_XB3-XBAT31
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
118309587
NCBI-ProteinID:
XP_035487794
LinkDB
All DBs
Position
6:complement(22090566..22184057)
Genome browser
AA seq
1048 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQRSSCPVKCQRIS
ARELNHVLPLKNLILKLEIKCDNHARGCGAVVQLQHLAEHADACDYGPAACTNRGCGEVL
SRRDVDAHARQACEHRPAGLCEGGCGLTLTHRERGSSGHCCLRALRAHNGALHCRLLGLD
RELKTQTIRANKREKALLAQLSAVHGELQVTALKYQKKFTEYSERIDALTKTVAFSCQEG
ETKSAMVVLLREGGSLGFNIIGGRPCADDNDSTSNEGIFVSKIIENGPADKEGGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIVVQVLRRAPHPKLVSADAQVSDTSTQTDITLQ
HIMALAKLPPASPPMTELEEYLLTEEHPPGHAYFDPNDFLEGIQQDIEREELEYEEVDLY
RASIQEKLGLTICYRTDDEDEAGIYISEIDPNSIAARDGRIREGDKIIQINGIEIQNRED
AVALLTSEGNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTASML
QQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTASNTLGSC
RKLTYSQDTLGSADLPFGSESFISADYTDADFLGIPADECERFRELLELKCQMRSSGVQG
LYCQGSGAEGQDQEGVDKELELLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHNSG
FRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGAEN
QGQAGASGPTSSNGGMIKPLLSPVQEACGPSRSRGSSKDQDGALQAESKERKLGESSKAG
RSCSQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPITTSDLEPK
MEWKVKIRSDGTRYITKRPIRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEER
KQHAVRAKEQRQRREFMKQSRADCLKEQSSPEERKEPNIIELSHKKMMKKRNKKIFDNWM
TIQELLTHGTKSPDGTRVYNSILSVTTV
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaaggggaccgtggacccggatttcaaatgcaacctg
tgcaacaaagtgctggaggacccgctgacgactccgtgcggccacgtcttctgctccggc
tgcgtgctgccctgggtcgtgcagcggagcagctgccccgtcaagtgtcagcggatctcc
gccagggagctgaaccacgtcctgccgctgaagaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgcgcggctgcggcgccgtcgtgcagctgcagcatctggccgagcac
gcggacgcgtgcgactacggcccggcggcgtgcacgaaccgaggctgcggcgaggtgctc
agccggcgggacgtggacgctcacgcgcggcaggcgtgcgagcaccggccggcggggctc
tgcgagggcggctgcgggctgacgctcacgcaccgggagcgcggctcgagcggccactgc
tgcctgcgcgcgctccgggcgcacaacggcgcgctgcactgcaggctcctcggcctggac
cgggagctcaagacgcagaccatccgggccaacaagagggagaaggcgctgctggcgcag
ctctccgccgtgcacggcgagctgcaggtgacggcgctgaaataccagaagaagttcacc
gagtacagcgagaggatcgacgccctcaccaagaccgtggcgttctcctgccaggaaggc
gagactaaaagcgcgatggttgtccttctacgtgagggcggatctctgggttttaacatc
ataggaggaaggccatgcgcggatgataatgacagcacttcaaatgaagggatctttgta
tccaagatcatcgagaatggtccagcggacaaggagggaggccttcagatccacgacaga
ataatagaggtcaatggcaaggacctgtccaaggccacccacgaccaggcggtggaggcc
ttccgcaccgccaaggagcccatcgtggtgcaggtcctgcgccgggccccccaccccaaa
ctggtcagcgccgacgcccaggtgtcggacaccagcactcagaccgacatcaccctccag
cacatcatggccctcgccaagctgccccctgcttcgccccccatgacggagctggaggag
tatctgctcacagaggagcatcctccgggacacgcatactttgaccccaatgatttcctg
gagggcatacagcaggacatcgaacgtgaggagctggaatacgaggaggtggatttgtac
cgagccagtatccaagagaagctcggcttgaccatctgttacaggactgatgacgaggac
gaggctgggatctacattagtgagattgatccgaacagcattgctgccagggatggcagg
attagagaaggggacaaaatcatccagatcaatggtattgagatccagaaccgggaggat
gctgtcgccctgctgaccagcgagggaaaccagaatatctccctgctggtggccagacca
gagatccagctggacgagggctggatggacgacgacaggaacgacttcctggatgacctc
cacatggacatgctggagcagcagcaccatcaggccatgcagttcaccgccagcatgctt
cagcagaagaagcacgaggaggacggaggcaccaccgacacagccacgctgctgtccaac
caccacgaaaaggacagcggggtcgggcgcacggacgaaagtacgcggaacgacgagagc
tccgagcaggagaacctcggtgacgaccagaccacagcctccaacacgttgggcagctgc
agaaagctgacctacagccaggacaccctgggcagcgccgacctgcccttcggcagcgag
tcgttcatctcggctgactacaccgacgccgacttcctgggcatcccggccgacgagtgc
gagcgcttcagggaactcctggagctgaagtgccagatgaggagcagcggcgttcagggc
ctgtactgccagggcagcggggccgaaggtcaagaccaggagggcgtggacaaggagctg
gagctgctcaacgaggagctgcgcaccatcgagctggagtgcctgaatatcgtccgtgcc
cacaagatgcagcagctgagggagcagtgccgcgagtcctggatgctccacaacagcggc
ttccgcaactacaacactagcatcgatgcccgccgccacgagctctcagatatcacagag
ctgccagagaaatcggacaaggacagctccagtgcctacaacactggcgagagctgccgc
agcacccctctgacgctggagctgtctcctgacaactcgctccgcagaggagcagagaac
cagggtcaggccggggcgtccggccccaccagctccaacggcgggatgatcaagcccctc
ctgtcccctgtccaggaagcctgtggccccagccggagcagaggctcctccaaagatcaa
gacggggccctgcaggcagagagcaaggagagaaagttgggagagtccagtaaggcgggg
cggagctgttcccagccacactcgccttataagcacgctcacatccccgcccatgcccag
cactaccagagctacatgcagctgatccagcagaaatcagctgtggagtacgcccagagc
caaatgagcctggtcagcatgtgccgggaccccatcaccaccagtgacctagagcccaag
atggagtggaaggtgaagatccgcagcgacggcacccgctacatcaccaagcgccctatc
cgggacaagctgctgagggagcgcgccctccgcattcacgaggagcgcagcggcatgacc
accgacgacgacgccataagcgagctgaagatgggccgctactggagcaaggaggagagg
aagcagcacgccgttcgcgccaaggagcagagacagcgccgcgagttcatgaagcagagc
cgagccgactgtctgaaggagcagagcagcccagaggagagaaaggagcccaacatcatc
gaactcagccacaaaaagatgatgaagaagaggaataagaaaatatttgacaactggatg
acaatccaggaacttctgacccacggtaccaagtcaccggacggcaccagggtttacaac
tcaatcctgtctgtgaccacagtctaa
DBGET
integrated database retrieval system
