KEGG   Scophthalmus maximus (turbot): 118309957
Entry
118309957         CDS       T09850                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
smau  Scophthalmus maximus (turbot)
Pathway
smau03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:smau00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    118309957 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smau03019]
    118309957 (rae1)
   03036 Chromosome and associated proteins [BR:smau03036]
    118309957 (rae1)
Messenger RNA biogenesis [BR:smau03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     118309957 (rae1)
Chromosome and associated proteins [BR:smau03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    118309957 (rae1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WDR55 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd WD40_RFWD3 ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_ACSF4 NBCH_WD40 Beta-prop_SPT8 ExoI_SH3 Beta-prop_WDR41
Other DBs
NCBI-GeneID: 118309957
NCBI-ProteinID: XP_035488537
LinkDB
Position
6:complement(20226144..20230940)
AA seq 369 aa
MSLFGTSSGFGTGGTGVFGSTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDTCWSDDGSKVFTASCDKTAKMWDLNSNQA
MQIAQHDGPIKAIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagtttgtttgggacgagctccgggttcgggacaggagggaccggggtctttggaagt
acaacaacagacagccacaatcccatgaaggatgttgaggtgacttcacctccagacgac
agcatcagctgtctggctttcagtccgcccaccatgccagggaacttcctgatcggagga
tcctgggccaacgatgtcaggtgctgggaggtgcaggacaatggacagacggttcccaaa
gcccagcagatgcacacgggtccagtgctggacacatgctggagcgatgatgggagtaaa
gtgttcaccgcttcctgtgacaagacggccaagatgtgggatcttaacagcaatcaagcg
atgcagattgcacagcatgacggtcccatcaaagcaatccactggataaaagcccccaac
tacagctgtatcatgactggcagctgggacaaaacactgaagttctgggacacccgctct
cccaatccaatgatgtccctgcagatgccagagagatgctactgtgcagatgttgtttac
cccatggcagtggttgccacggccgagagaggcctgatagtctaccagctggagaaccag
ccctctgaatttcgcagaatagactcccctctcaaacatcagcaccgctgtgttgccata
ttcaaggacaagcagaacaagcccacaggctttgcactgggaagcattgagggtcgagtg
gccatccactatatcaaccctccaaacccagccaaagacaacttcaccttcaagtgccac
cggtccaacggaaccaacacaaccacgccacaggacatctacgctgtcaatgccatctcc
ttccatcctgtccatggcacactggctactgtgggctcagacgggcgcttcagcttctgg
gacaaagacgcccgcacaaagttgaagacgtcggagcagctcgaccagcctatcacggca
tgctgcttcaaccacaatggcaacatctttgcatatgcttctagttacgactggtcaaag
ggccatgagtactacaacccccagaaaaagaactacatcttcctgaggaacgctgcagag
gagctgaagcctcggaacaagaaatggtga

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