Scophthalmus maximus (turbot): 118310275
Help
Entry
118310275 CDS
T09850
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03013
Nucleocytoplasmic transport
smau03015
mRNA surveillance pathway
smau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118310275 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
118310275 (acin1a)
03015 mRNA surveillance pathway
118310275 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118310275 (acin1a)
03041 Spliceosome [BR:
smau03041
]
118310275 (acin1a)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118310275 (acin1a)
Spliceosome [BR:
smau03041
]
Complex C
Other components
EJC/TREX
118310275 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
118310275
NCBI-ProteinID:
XP_035488946
LinkDB
All DBs
Position
5:10742848..10760289
Genome browser
AA seq
1758 aa
AA seq
DB search
MADLEDVTLDGRTLQSLRVADLKAALEERGLSKSGQKNALIKRLKGALMLENLQRTSTAH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYDTNEEEAHAEVNNSSSCP
PQAQDVTPAVAEQHKPPGPSGEGLFAAGNEGEGNGEKEADMSCPPASGSVAMRGSAGENR
PERGSASSEVAADSDDEDSDDGEEDGDDDDWDSSARRRSLREPARAPSTRERSGASCQPQ
QQHIPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVGPARRSSSTSSSGSSSSG
SRSSSPEPQRSGHAERKPGPLTLLARKMAKEGAFSGAGWHGSVGEGDRQGCSTLAASFPG
RAPPEGLVSAITHTANTAGHVPFPMIPGTNQGVTGAHSAHIQVPVSVLKATATEERDRER
ESEMAREQAVELERQEGQRKLEQEKAMELERERALALEREEKQRALERERIERQQALERE
EREKALQRERELALERERQERELALALERERQERELALALERERQERELALAKEREEREQ
ALARERALELERQKELERQRALEQERLQREREEREKFEREEMEKAMELERVKALERERAL
EQERLEKERALEAERKERERIEREKALEQERLERETLEREKALEQKRIQREKALEQERLE
RQRALEQERMEREKTLERERIEREEASERERIEREKALQQERFERERALEQERLELERKE
KERIEREKELERERIEREKALEREREAKEKKAREAALEREMVEKERAERERKEKLEREKA
LEQEKLEMEIALEKERKENERALEEERALERQRLEKEKAMQKERQEQERALEQEKERARL
AEKERESHLPPSKRGREIGLTPLPTPPPLSTGPARKPSTEAGAQEDVHAPVPRSEPQSAV
SGAPMSPTPLSPQSSFKKFRFLRDSPIQPKPSSASMVIKRPRTFSDTPQPRASPVFSPAS
VAGTQQEEHRPSAEQEDQRMQTHSEVVAAPPGSTKEEATNLISEDKEPADSPKSEHTAKD
STKKTNVEEKKCPSSPPDAAQRKGRDAKKEPTRRRSSSNDSSSSDSDSGSSSSRSSRSSA
SSQEETSSSRGRREGKPERDSSPQHRATVEIRAEGPQQIPKVSPRKRATSGEKSNTAADG
DSRTQEPFIEDPPGDGTQRKRKDSEREEEKDKQRKVKETAMAESEKPSENSEETPKAFSA
RKISLSSNKLSPGSTEAEQESGSAAGRKRRWGSSTAVTAKKPSISITTDSLKSLIPDIRP
CLGQEAIVDLHPEEAALSGVEDEERERSDQDLQIRRTVTQVVHPESQENGQKEAKRSRHE
EQQEEDDLQGDRDGERTRVHEEKMDTSFPATVETPSPSQTSHDVEINTVTPGDTLIRRSI
SQQKTGVSITIDDPVRASRQPSPPRGNVSNIVHVCNLVRPFTLGQLKELLSRTGTLVEEG
FWIDKIKSHCYVTYSSSDEAVATRAALHGVKWPQSNPKVLSVDFCQQNELDFHKGLGAAD
RPGAEEQGPGPGRGRTSGLPSLLPERDQWAEREREMERREKARAEREWDRDKVKEFGKPG
GEKEGGPRRSRSRERKRKERGKSKEKKSEKKEKAAEDPPAKLLDDLFRKTKAAPCIYWLP
LTEEQFAQREAARAERTKEREKRRKEQEEEEEKKREEERKERTKAGGGTAGDRSEGEKDK
DRDRERDRDRERGRDRDRERERENDKRRDGYRRPGGSGAGGGGGGGGGGGGGGGGGGGGG
GSGGRRSRSRSDPRERRR
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacggcagaacgctccagtcccttcgagttgcg
gacttgaaagccgcgctcgaggagaggggactctcgaaaagcggccagaagaatgcgctc
atcaaacgactcaagggggctctcatgctggagaatctgcagaggacctccaccgctcac
attggcctgcagccaaactctcagattggtgaggaaatgagccagaacagcttcatcaag
cagtatctggctaaacaacaggagctcctgaggcagcgtctggagagggaggcccgcgag
gcctatgacactaatgaggaagaggcccatgccgaagtgaacaatagttcatcatgtcct
cctcaagctcaggatgtcacaccagcagtggctgagcagcacaagccacctggcccttct
ggagagggattgtttgctgcagggaatgagggagagggcaacggggagaaggaggctgac
atgtcatgtccgcctgcgtctggctctgtggccatgcgtggttctgctggtgaaaaccgg
ccagagaggggttccgcatccagcgaggtcgcagctgacagtgacgatgaggatagcgac
gatggagaggaggatggtgacgatgacgattgggacagcagtgctcggaggagaagcctc
agagagcccgccagagcgccctcaaccagagagaggtctggagcgtcatgtcaaccccag
cagcaacacatcccttcccttttgtctcctcagctccgccagcccacacctcccccctca
ccgcctccagagttgtcattccccttgcctgacacccctaaacagagccctcctagtcca
gatgtaggcccagctaggcgctcttccagtacctccagctcgggttcctccagcagcggc
agccgtagtagcagcccagagccacagaggagtggacatgccgagcgcaagcccggccca
ttgacccttctggcacgtaaaatggcaaaagaaggagctttctctggagcaggttggcac
ggcagcgttggagaaggcgataggcagggttgcagtacactagcagcatcgtttcctggc
agagcacctccagagggtcttgtatctgccatcacccacacagccaacactgcaggccat
gtgccatttcccatgataccaggcaccaaccagggtgtcacaggagcacattcagcccat
attcaagtacccgtgagtgttctcaaggccactgcaaccgaagagagggacagagagagg
gaatctgagatggcaagagaacaggccgttgagctggaaagacaagaggggcagagaaaa
ctcgagcaagagaaagcaatggagttagagcgggaaagggctcttgcattagagcgagag
gaaaagcagcgagctttggagagagagagaattgagcgacagcaggccttggaaagagaa
gagcgagaaaaagccttacagagggagagggaactagctcttgagcgagaaaggcaggag
agggaacttgctcttgctcttgagcgggagaggcaggagagggaacttgctcttgccctt
gagcgagagaggcaggagagggaactagctttggctaaagagagggaggagcgagagcaa
gccttagcacgagagagggccctggagctggagagacagaaggagctcgaaagacagagg
gctctggagcaagaacgtttacagagagaaagggaggagagggagaaattcgagagggaa
gaaatggagaaagcgatggagctagaaagagtcaaggcattggagagagaacgggctctt
gagcaagagaggttggagaaggaaagagctttagaggccgagagaaaggagagggagagg
attgaaagagagaaggctttggagcaggaaaggctggaaagggaaacgttagagagggag
aaagccttggagcaaaagagaatacagagagagaaagcactggagcaagagagactagaa
aggcagagagccctggagcaagaaagaatggagagagagaaaactttggagcgggagaga
attgagagagaggaagcttcagagcgagagagaatagaaagagaaaaggctctccagcaa
gaaagattcgaaagggaaagagccctagagcaagagaggttggagcttgagaggaaagaa
aaagagagaatagagagagagaaagaactggagcgagagaggatagagagggaaaaggcc
ttggaacgagaaagggaggcaaaagagaaaaaggcgagggaggcagctctggaacgggag
atggtggagaaggaaagagctgaaagggagaggaaagaaaagctagagagggagaaagcc
ctagagcaagagaaacttgaaatggagatagccttagagaaggagcggaaggagaatgag
agagccctggaggaagagagggctctggaacgtcaaagattagagaaagaaaaagccatg
cagaaagaaaggcaggagcaggagagggcgctggagcaggagaaagagcgagctaggctg
gctgagaaggagagggagagtcacctccctccatccaaacgtggccgtgagattggtctc
acccccctgcccactcctccccccctctccacagggccagctcgaaaaccctcgactgag
gcaggagcgcaggaagacgtccacgccccagtgccgcggagtgaaccccaatcagcagtg
tccggtgcgcccatgtcaccgacacccctgtcgccacagtcttcatttaagaagttccgg
ttcctgagggactctccgattcagcccaaaccctcctctgcttccatggttatcaagcgg
ccccgtactttctccgatacccctcagccacgggcttcgcccgtcttctccccagccagc
gttgcgggaacacagcaggaagaacaccggccctctgctgaacaggaagaccaacgcatg
cagacacactctgaggttgttgccgcaccgcctggatccacaaaagaagaggccacaaac
ctcatatctgaggacaaagaaccggcagattcaccaaagtcagaacacactgccaaggat
tccaccaaaaaaacaaacgtggaggagaaaaagtgtccttcgagcccaccggatgcagct
cagcggaaggggagagatgctaagaaggaaccaactagacgcaggtcatcttcgaatgat
tcctcttcctcagactcagactctgggtcctcatcatctcggtcctcaaggtcatctgca
tcttcccaagaggaaacctcctcatccagaggtagacgggaggggaaacctgaaagagat
tcctcaccacagcatagggcgacagtagagatcagggctgagggtccacaacaaatccca
aaagtctcccctcgcaaaagagcgacgtctggagagaagagcaacacagctgctgatgga
gacagtcgcacccaggaacctttcatcgaagatccacctggagatgggacacaaaggaaa
agaaaggacagtgagagagaagaggaaaaggacaaacaaaggaaggtgaaggagactgcc
atggcagagtccgagaagccttcggagaacagcgaggagacaccaaaggccttctcagct
cgtaagatctctcttagcagcaacaaattgtccccgggcagtaccgaggctgagcaggag
tctggttccgcggccggtcgcaagcggagatggggttccagcacagctgttactgccaag
aaaccttccatcagcatcaccactgactcattgaagtctctgatcccagacattagaccg
tgcctcggacaagaggcaatagtggatctgcaccccgaggaagcagccctctctggggtg
gaggacgaagagagggaacgctctgaccaggaccttcagatccgtcgcactgtcacacag
gtggtgcacccagagagtcaggagaatggacagaaagaagcgaagaggagcaggcatgag
gagcagcaggaggaggacgatctacagggagacagagatggggaaagaacgagggtgcac
gaagagaaaatggacacctcatttcctgcgacagtggaaaccccatcaccatcacaaacc
agccatgatgtcgaaatcaacactgtgacccccggcgacaccctcatccgtcgctccatc
agccagcagaagacaggcgtctctataacaatcgacgaccctgttcgcgcgtcccgtcag
ccttcaccgcctcgtggcaacgtctccaacattgttcacgtctgcaacctggtgaggcct
ttcactctggggcagctgaaggagctgctcagccgaactggcactctggtggaggagggc
ttctggattgacaagatcaagtctcactgctacgtcacttactccagctcggacgaggcg
gttgccacacgggcagctcttcatggagtgaaatggcctcagagtaacccaaaagtcctc
agcgtcgacttctgccagcaaaatgagttggacttccacaaaggcctaggcgcggctgac
agacctggagccgaggaacaggggcctggccctggtcgaggtcgaacatcgggcctgccc
tctctcctccccgagcgagaccagtgggctgagcgtgagcgcgaaatggagcgccgggag
aaggcccgggcagagcgggagtgggatcgggacaaggtcaaagagttcgggaagcccggg
ggagagaaggagggagggccccggaggtcgcgctccagagagcgaaaacgcaaggagagg
ggaaagagcaaggagaagaagagtgaaaagaaggagaaagcagcagaggatccacctgca
aagcttcttgatgacctgttccgcaaaactaaagcagctccctgcatttactggcttcca
cttacagaggagcagtttgctcagcgagaagctgcaagagccgagcggacgaaggagcgc
gagaaacgcaggaaggagcaggaggaggaggaggagaaaaaaagggaagaggagcgcaag
gagaggacgaaagctggaggcggcacggcaggagaccggagtgagggtgagaaggacaag
gacagagacagagagagggacagagaccgggaacgaggtagagacagggacagggagagg
gagagggaaaatgacaaacgcagggatggttaccgtaggccggggggcagcggggcaggc
ggtggcggtggcggtggtggcggcggcggtggcggcggcggcggcggtggtggtggtgga
ggcagcggcggccgacgctcgcgcagtcgcagcgacccgcgagagaggcggcgctaa
DBGET
integrated database retrieval system
