Scophthalmus maximus (turbot): 118310325
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Entry
118310325 CDS
T09850
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118310325 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118310325 (smg7)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118310325 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
118310325 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
118310325
NCBI-ProteinID:
XP_035489040
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All DBs
Position
5:27727938..27741142
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AA seq
1215 aa
AA seq
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MCARSRARSLVRVRLEQHGGGRSVSFGTSRCVRVCRPGRMNLCAQYLRQAEALKADMTGT
SDITSHTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQ
SQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ
SSTSAIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA
ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWSVSDFVRAF
IKFHGHIYLSKSLEKLDALREKLEEQFQRLILQKAFSSQQLVHITVINLFGLHHLRDLAA
VTGGEQSYSSEQQISWFQLLGLFMSFLGVMCSRVLLNKTRGEEIMGECPLPAIKVSLDWL
RLRPGVFHEAAVDRRQHVWPWLVSILNSFQPKEDDVSGSSATPLPEEFELQGFLALRPAL
RSLDFTKGHQGVLVDQDGPPLHARHQRLISLGKWVADNQQGLIQCIVSEDGLLLFITDIP
EQAIEEPQEKEAPVLQESFNGEQTPHDGGNSGLKSVLSAGKTQSSWPDGSDRPVVTFKEN
IKPREQSREPTRSHPLKDGGKERRDFTKGAGAAGKGEPKRDGKRKSETKKSGHEKTTDAG
KQVKAQTELRKTPVSEVKKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPGFPPSAYVIPP
PVAFTGLQVNPGFTFSASVSGPGPFLQPAVHNQAGAQVQPGKPSHIPYSQQRPSGPGPGS
QSPSQGQQPQNQQALQQSVQLQVQAMSQQQSPTKPVQQVGMGKSPPHLQQQYMQVQDQQP
AQMWTQAQAALQKMSPMQMSLKQPQTTFYLAPQDPLKLYEHQLQTQTQLSNVDKKIKYPD
VKMQDFYWDPSYRMGDGLSVMADRMKRPDQDVPRGPPFEDNKSSPLLPPDLLKSLADFEE
EEELIFSKPPDFFQALAAPLTSAPGPNIFLPPQTRMESCPEVVGQSSSLLPISGFPMQEY
NQNSIFSQAYGKNLPPSSKPDAPMMHQEPSLYSLFEGTPWSPSLPASSDHSTPASQSPHS
SNPSSLPSSPPTHNHGAMPFSNFGPIGTPDSRDRRVVDRWKADKTGAASGFGLDYLPTAA
SAASDSSWHQSGPAGSSWTNQESPMEESSSTVLLDSLKSIWSSSMMQPGPSALEQLLLQQ
KQKQQRGHGAMNPPH
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgcgcggtcgcgcgcgcgctcgctcgtgcgggtcagactggaacaacatggcggc
gggaggagcgttagcttcgggaccagtcgttgtgtgagagtctgtcgacccggcaggatg
aacctctgcgcccagtacttacgacaggcagaggccctgaaggcggacatgacaggtacg
tctgacatcacctctcacacagattcaaagctgggggcggcggaggtgtggacgtcccgc
caggccctgcaggacctctaccagaagatgctagtgacggacctggagtacgctttggac
aagaaggtggagcaggacctgtggaatcatgctttcaagaaccagatcaccacactgcag
agccaggccaagaaccgggccaatcccaatcgcagcgaggtccaggccaacctgtcgctt
tttctggaggcagccagtggcttctacactcagttactgcaggagctgtgcaccgtcttc
aacgtggacctgccgtgtcgcgtcaagtcgtcgcagctcggcatcatcagcaacaagcag
agcagcaccagcgccatcgtcacgccgcagcccagctcctgctcctacatctgccagcac
tgcctcgtccacctcggggacatcgctcgttaccggaaccagaccagccaggcggagtca
tactaccgacacgcagcgcagctggttccgtccaacggtcaaccgtacaaccagctggcc
atcctggcctcgtctaaaggagaccacctcaccaccatcttctactactgccgcagcatc
gcagtcaagttccccttcccagcagcctccaccaacctgcagaaagcgctgtccaaggcc
ctggagagtcgtgacgaggtgaagaccaagtggagcgtgtcggacttcgtcagggccttc
atcaagttccacggccacatctaccttagcaagagtctggagaagctggacgctctgcgg
gagaagctggaggagcagttccagaggctgatcctgcagaaagccttcagctcccagcag
ctggtgcacatcacagtgatcaacctgttcgggctccaccacctcagagacctggcggcg
gtgactggcggcgagcagagctacagcagcgagcagcagatcagctggttccagctgctt
ggactcttcatgtccttccttggcgtcatgtgcagccgcgttctgctcaacaagacccgg
ggcgaggagatcatgggcgaatgtcctctgccggccatcaaggtttccctggactggctg
aggctgagacccggcgtgttccacgaggccgccgtcgaccggaggcagcatgtctggccc
tggctcgtctccatcctcaacagtttccagcctaaagaggacgacgtgtccggctcctca
gccacgcccctgcccgaggagtttgagctccagggtttcttggctctccgacctgctctg
aggtctctggacttcaccaaaggtcaccagggcgtcctggtggaccaagacgggccaccg
ctccacgcccggcaccagagactcatcagtctgggaaagtgggttgccgacaaccagcag
gggctgatccagtgcattgtgagcgaagacggcctcctcctcttcatcaccgacattccg
gagcaggccatcgaggagccacaggagaaggaggccccggtgctgcaggagtcgttcaac
ggcgagcagacaccccacgacggcgggaactccggcctgaagtcggtgctgtcggcgggg
aagacgcagagctcgtggccggacggcagcgaccggcccgtcgtcaccttcaaggagaac
atcaaaccgcgggagcagagccgcgagccaacgcggagccatccgctgaaagacggcggc
aaagagcgcagagacttcacgaagggcgccggtgctgcggggaagggagagccgaagagg
gacgggaagaggaagagcgagaccaagaagagtggacacgagaagacgaccgatgctgga
aaacaggtgaaggcgcagacggagctgaggaagactccggtgtccgaggtgaagaagact
cctgtcactcaaactcaaaccacctgctcctcccagttcatccccatccatcatcctgga
gccttcccccccctgcccagtagacctggtttccctccctcagcctacgtcatccctcct
cccgtggcgttcacaggcctccaggtgaatccaggcttcaccttctccgccagcgtgtcc
ggccctggaccgttcctccagccggccgtccacaaccaggccggtgctcaggtccagcct
gggaagccgtcccacattccctacagtcagcagaggccctcgggtccagggcctgggagc
cagagcccctcccagggtcagcagccccagaaccagcaggccctgcagcagtcggtccag
ctgcaggttcaggcaatgagccaacagcagtctcccaccaaaccagtccaacaggtcgga
atggggaagagtccgcctcacctgcagcagcagtacatgcaggtccaggaccagcagccg
gcccagatgtggacccaggcccaggccgcgctacagaagatgagtcccatgcagatgagc
ctgaagcagccgcagacgaccttctacctggctcctcaggaccctctcaaactgtacgag
caccagctgcagacgcagacgcagctgtccaatgtggacaagaagatcaagtaccccgac
gtcaagatgcaggacttctactgggacccgtcctacaggatgggggacggtctgtctgtc
atggccgacaggatgaagaggccggatcaggacgtgccccgggggccccccttcgaggac
aacaagagctcacctctcctgcctcccgacctgctaaaatctctagcagatttcgaggag
gaggaggagctcatcttttctaagcctcctgatttcttccaggccttggcagctcctctt
acttctgctcctggaccaaacatatttctgccgcctcagactaggatggagagctgcccc
gaagtcgtcggccaatcgtcttctctccttcccatctcaggcttccctatgcaggagtac
aaccagaacagcatcttcagtcaggcatacggcaagaacctgccgcccagctccaagccc
gacgctcccatgatgcaccaggagccgtcgctctactcgctgtttgaggggacgccgtgg
tccccctccctgcctgccagctcagaccactccaccccggccagccaatcccctcactcc
tccaaccccagcagcctgccgtcctcccccccgacacacaaccacggagccatgcccttt
tctaacttcgggcccatcggcactccggacagccgggaccgccgggtggtggaccgctgg
aaggccgacaagaccggcgctgcgagcggcttcggtctggactacctgccgaccgcagcc
tccgcagcatccgacagcagctggcaccagagcggcccggccggcagctcctggaccaat
caggagtctccgatggaggagtcgtcctccaccgtgctgctcgacagcctcaagtccatc
tggtccagctccatgatgcagcccggcccatctgcgcttgagcagctcctcctgcagcag
aagcagaagcagcagcgaggtcacggcgccatgaacccgcctcactga
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