Scophthalmus maximus (turbot): 118310340
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Entry
118310340 CDS
T09850
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118310340 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smau01009
]
118310340 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smau04131
]
118310340 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
smau03029
]
118310340 (rb1cc1)
Protein phosphatases and associated proteins [BR:
smau01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118310340 (rb1cc1)
Membrane trafficking [BR:
smau04131
]
Autophagy
Autophagosome formation proteins
ULK complex
118310340 (rb1cc1)
Mitochondrial biogenesis [BR:
smau03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
118310340 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Osmo_CC
Motif
Other DBs
NCBI-GeneID:
118310340
NCBI-ProteinID:
XP_035489081
LinkDB
All DBs
Position
5:complement(19370973..19385542)
Genome browser
AA seq
1629 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAIQHQVLVVNGGECMAAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLMKFDTSYSNYQH
DLEEIKVKLTKLGTAVSVMARIPLLESLTRHSYRESMEKSTSTPGKDSDETEGEKSTESA
RFTAEAKRPSKLSASFSVSGAATSGDQETNEMTDSGGLRAALLDDDDDDDDDTPYFANLS
SFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRLIQPFLADCRDTIAKLDNQNMKAI
KGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMI
MLNNHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDSEKLQALLRLLTELIER
VRVVEALSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKQLYEAEKFKRESFGKLF
RKSFLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISLEDLQYLKSCCPLEVQPFLMLPT
LCDFEPLNHHVETLHQLVQAAQSVDEMSKTITDLLSEQRSSCCYSAHRSTVLTPQADSIP
GSSTPVSPKTPASLGLQGASCQPLHVPVPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQ
QGSLDLDSLAESPESDFMSAVNEFVIEENLTSPNPISDPTSPDMMVESLYSSVINAIDIK
RMQDTTTLERENLRITVLKQVIDKYQSAAEESHSNLRSVKDDLYHLRGLVLKEHHDFSFV
LRNTTTEVRNIVDNFCQTHELKLKEQHQSELLSVRQDLEKQVQTLMEENQVNQNIVRDVQ
RAMLELEGLMERKEKELTQLENERERWVETESGLTERIKNLEQTISELAEEIKTLSAARD
SLSSQLESLHFEIERGQQKIRQELEVVEQSHLKELEVRMTLEHKVELETVSKENQEALEH
LAAENSTKLSEASDQHATAVREKDNQIKDLEARITELAELRCKLEVELALKESETEQVRL
LFDEAKVQQAEAVKSQVEAETKVLDEELADIKKQLQLKNEEYELDLAELRSLMSIEKDHC
ISELVDRHEEETILLRSELSSMQQQVQDAEKNHIEQQQKLKQELDQQVALNEEREKQFSN
FQELEQELRTAVNNLQAENDLLSNKLEQDRQAFEKDLEKQESTKVASPDALKELELQKEE
TEKRLSEKIKQLESELHERQSSKSDDGLSLHVQASADSGAPLSLDSALQERLQQERASLQ
SQMELLEKRKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINELTEKLRTVTQQQDK
DKGLIETLSEDRASVMQEKKHLEEELNRLRSTALVSSAFFTPNPSAHEVTESGAGAAAAS
ARALPAAGACSSEPMTEADRLASVAAIRDDEQVDSAVEASMVTVHDNILMSEEKQRIIIL
ERTLHMKEEENKRLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFT
VGPTLYFLHSESLTALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRV
KAVPWNRKV
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggcagcacattgacatttgacactgatctt
gctgtgcagactgtactggagcttaaacatgcaatccaagccaagtataagattgcaatt
caacatcaagtccttgttgtcaatggaggggaatgtatggctgcagagagacgagtctgc
agctacagtgcaggcactgaaaccaaccccatattcctgttcaacaaagagatgatcttg
tgtgaccgggatccaacgatccccaaaaccaccttctcgattgagagtgagattcaggtc
aaggtggaggagtctctactgatgccagctgtttttcacactgttgcctcacgaacacaa
cttgctctggaaatgtttgaagttgccaagaaactttgctctttctgtgaacgtttggtt
catgacgaacaccttcagcatcaaggctgggctgctatcatggctaatctggacgactgc
actctgtcttatcagaagttgcttatgaaatttgacacttcatactcaaattatcaacat
gacttggaagaaatcaaggtgaaacttacaaagttagggacagcggtttctgtaatggct
aggatacccctgctggaaagtttgacaagacacagttacagagagagcatggagaagtcc
acttcaaccccagggaaggattcagatgagacggaaggagaaaagtccaccgagtctgcg
cgcttcacagccgaggcaaagaggccctccaagttatcagcatccttctctgtctcggga
gcggccacaagtggtgaccaggaaacaaatgaaatgactgacagtggtggactgagagct
gcgctattagatgatgatgatgacgacgacgatgacactccctactttgcaaacctgtcc
tccttcaatgtcacactattagactggatcaacgtgcaagaccgacccaatgatgtggaa
tcggttgtgagaaaatgctttgactctatcaataggcttgacccacggctcattcaaccc
ttcctggcagattgtcgtgacacaattgccaagttagataatcaaaacatgaaagccatc
aaggggcttgaggaccggttgtacgctttggaccaaatgattgcaagctgtaagaagttg
gtgaatgaacagaaagaacttgctcagggatttttggccaatcagaagcgggctgaaaac
ctgaaggatacatctgttttgcctgacttgtgtctgagtcacaccaaccagctgatgatc
atgctgaacaaccacaggaagctgctcgacatcaaaaagaagtgcactactgccaaacaa
gaactagcaaacaaccttcaagtcagactcaaatggtgctgctacgtgatgcttcatgca
gaccaggacagcgagaagcttcaggctctactcagacttctgacagagctgatcgaaaga
gtgagagtagtcgaggccctcagtactgtgccccagatgtactgcttggcggtggtggaa
gtcgtcaggagaaaaatgtttatgcgccactacagagagtgggcttatgcactcgtgaag
gatgggaaacaactgtacgaggcagagaaattcaaaagggaatcgtttgggaaactcttt
aggaagtctttcctcagaaatcgtttgttcagaggactcgattcctggcctccaacatcc
ttctgtacacgaaagccaagaaggtttgacgatgaacttccagacatctcactcgaggac
ctgcagtacttgaaatcttgttgtcctctagaggtgcagcctttccttatgcttcctaca
ctgtgtgactttgagcccttaaatcaccacgtagagacgcttcaccagctggtccaagca
gcacagagtgtggatgagatgtccaaaactattactgacctgttaagcgagcagaggtcc
tcctgttgttacagtgcccacagatcaaccgtactgaccccacaggctgacagtatacct
gggagctccacaccagtctcacccaaaacccccgcctcccttggccttcagggagccagc
tgccaacccctacacgttcctgtcccggctcctctagaggacctgtccccagacagcatc
gatgcacaaacatttgactttgaaaccatcgggcatccgaacatggatcccgtcctgcag
cagggctcgctcgacctggattctctagcggagagccctgaatctgacttcatgtctgct
gtcaatgagtttgtgattgaagagaacttgacctccccgaaccctatcagtgaccccacc
agccctgacatgatggtagagtctctgtactcttcagtgatcaatgccattgacattaag
cgaatgcaggataccacaacgctagaaagagagaatttgagaatcactgtcctcaaacaa
gttattgacaagtaccagtctgctgcagaggagtcccattccaacttaagaagtgtaaag
gacgacctctatcacttacgaggtctagtattaaaagaacatcatgactttagctttgtc
ctgaggaatacgaccacagaagtgcgcaacatcgtggacaacttctgccagacccatgaa
ctgaagttgaaggagcagcatcaaagtgagcttctgtctgttcggcaagaccttgagaag
caggttcagacactaatggaggaaaatcaagtaaaccagaatattgtcagagacgtccag
cgtgctatgctcgagctcgaggggcttatggagcgcaaagagaaagaactcactcagctc
gagaatgagcgagagagatgggttgaaaccgagagcggcctgacggagaggatcaaaaac
ctggagcagaccatcagtgagctagctgaagagatcaagacgctctcagctgcaagagac
tccctgagcagccaactcgagagtctgcattttgagattgaacgtggccagcagaagatt
cgacaggagttggaagttgttgagcaatctcacttgaaggagcttgaggtcagaatgacg
ctggagcacaaggtagaactggagactgtctccaaggagaatcaggaggctctggaacat
ctggctgctgaaaacagtacgaagttaagtgaggccagtgatcagcatgccactgctgtc
agagagaaggacaaccaaatcaaggacttggaggcacgtattactgagctcgcagaactc
cgctgcaaactagaggtggagctagccctcaaagagtcggagacggagcaggtgaggctc
ttatttgatgaggccaaggttcaacaggctgaggctgtgaagtctcaggtagaggccgag
accaaagtcctcgacgaagagctggcagacatcaaaaaacagcttcagcttaaaaatgag
gagtacgaactggacctagcagagctgaggagcctcatgagcattgagaaggaccactgc
atctcagagctggtggacagacacgaggaggaaactattttgttgcgcagcgagctctcc
tccatgcagcagcaagtccaggatgctgagaagaaccacattgagcagcaacagaaactg
aagcaggaattagaccagcaggtggctctgaatgaggagagagaaaagcagttcagtaat
ttccaagaactggagcaagagctgaggactgctgtcaacaatttgcaggcagaaaatgat
ctgctctcaaacaaactggagcaggacagacaagcgtttgagaaagacctggaaaaacaa
gagtccaccaaggtcgcatcaccagacgccttaaaagagttggagctgcagaaggaggag
acggagaagagactgtcagagaaaatcaaacaacttgagagtgagcttcacgagagacag
tcttcaaaaagtgacgacgggttgtcgctgcacgtccaggcgagcgcagactccggagca
cctctgtctctggactcggcactacaggagcggctgcagcaggagagggcctcgctgcag
tcgcagatggagctcctggagaagaggaagaacgaggagatgcagaacctcaagacgtca
ctcatcgcagagcagcagactaatttcaacactgttctaacccgagagaagctgaagaag
gagcagatcatcaacgagctcacggagaagctgcggacagttacccaacagcaggacaag
gacaaaggtctgatagagacgctctctgaggaccgggctagtgtcatgcaggagaagaaa
cacttggaagaggagctaaatcgcctgcgcagcactgcactggtctcctctgccttcttc
actcctaacccgtcggctcacgaggtcacggagtccggagcaggagcagcagcagcatca
gccagagctctgcctgcagctggggcctgttcctctgagcccatgaccgaagctgacaga
ctggcctctgtggcagccataagagacgacgaacaagtcgactcagcagtggaagcaagc
atggtgacagtccatgataatatcctgatgtcagaggagaaacagcggataatcatactt
gagaggactttacacatgaaggaagaggaaaacaagcgcctcagtcaaagattgatgtct
cagagcatgtcgtccgtgtcgtcacggcattcggacaaaatcgccatcagagacttccag
gtaggcgatttggttctgatcatccttgatgaaagacatgacaactacgtgctgttcaca
gtcggtcccaccctctacttcctccactcggagtcgctcactgcgctggacctcaaacca
gcatcagggacttcaaggcggccgtgggttcttggaaaagtgatggagaaggaatattgc
caggcaaaaaaggcccagaaccggttcaaggttcccttaggaaccaagttctacagagtg
aaagctgttccatggaacagaaaagtataa
DBGET
integrated database retrieval system
