Scophthalmus maximus (turbot): 118310345
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Entry
118310345 CDS
T09850
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03030
DNA replication
smau03410
Base excision repair
smau03420
Nucleotide excision repair
smau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118310345 (lig1)
03410 Base excision repair
118310345 (lig1)
03420 Nucleotide excision repair
118310345 (lig1)
03430 Mismatch repair
118310345 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smau03032
]
118310345 (lig1)
03400 DNA repair and recombination proteins [BR:
smau03400
]
118310345 (lig1)
Enzymes [BR:
smau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118310345 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
118310345 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
118310345 (lig1)
DNA replication proteins [BR:
smau03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
118310345 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
118310345 (lig1)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
118310345 (lig1)
NER (nucleotide excision repair)
Other NER factors
118310345 (lig1)
MMR (mismatch excision repair)
Other MMR factors
118310345 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
118310345
NCBI-ProteinID:
XP_035489095
LinkDB
All DBs
Position
5:complement(24572308..24618688)
Genome browser
AA seq
1007 aa
AA seq
DB search
MQRSIASFFQPKGKTRDDDKKKEPVKKPAKSPLRVQNGVVEADSPIKKVAKRSRQIMDSD
EDEAPVSKGVGDKEAASKPEKDDVFKAVPTPLSPPPAPATPVTPATPATPAQSASPGTPG
TPNSTSPSEIVKRKTARKMFPKRKLDESRSGGSGGQKEEAEAKEEQGQRKKRPRVETTTA
TDGDPDEPMEEGAKAEEVEKAVTECDGRDEEVEENEKKEDGEEAKEAGNSSDEKEEKAEG
AEKNNEAKEETDDEGESADAKKKKKKKKKKEEEEEEEVVEKDTQVVEESPKRRTGKGEKD
KEPAKKAPISSFFAPRKAAVKTEKNEGEKKTTSGERKSSAEESKDTKSESTPGQTDYDPA
RPGYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLC
CVYLCLNQLGPAYLGMELGIGETLLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSN
QRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGK
LRIGLAEQSVLSALSLAVCLTPPGQDFPPAVIDAGKGMSAESRRAWIEEKTLILKQTYCE
MPNYDILIPVLVTEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVLKKFDEAAFTCEYKY
DGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDSEAVAWDREK
KQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRESFTEV
EGEFVFARYIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDY
LEGVGDTMDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHY
KYLKDHILPKPRAYYRIEPSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGLVDPEKGIS
LRFPRFLRIRDDKKPEDATTGAQIADLYKRQQQIQNQGEKADPEDFY
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcgtccttcttccagccaaagggcaaaaccagggacgatgacaag
aaaaaggaacctgtgaaaaaacctgccaaaagccccctcagggtgcagaatggcgtcgtg
gaggcggattctcccattaagaaagttgccaagcgcagccggcaaataatggacagtgac
gaggacgaggcaccggtgtccaagggagtaggagacaaagaagccgccagtaaaccagaa
aaggacgacgtgttcaaggcggttcccaccccactgtctcctccaccagccccggccacg
cccgtgacgcccgccactccggccaccccggcccagtcggcgtccccggggacccccggc
acgcccaactccacctccccgtccgagatcgtcaaacgcaagactgccaggaagatgttc
cccaagaggaagctggacgagagccggagcggcggcagcgggggccagaaagaggaggcc
gaggccaaggaggagcagggtcagcgaaagaaacgaccccgtgtggagacgaccacagcc
accgacggggaccccgacgaacccatggaggagggagcaaaggcagaggaggttgaaaag
gcggtgaccgagtgtgacggccgggacgaagaggtggaggagaacgagaagaaagaggac
ggagaggaggccaaggaggcgggaaacagctctgatgagaaggaagagaaagctgagggc
gcggaaaagaacaacgaggcaaaggaggagacggatgatgaaggggaatctgcagatgcc
aagaagaagaagaagaagaagaagaagaaggaggaggaggaggaggaggaggtggttgaa
aaggacacgcaagtcgtagaggagagcccgaaaagacggacggggaaaggggagaaagat
aaggagccggccaagaaagccccgatcagcagtttctttgcgccgagaaaagctgcagtg
aagacggagaagaacgaaggtgagaagaagacgacaagtggagagaggaagagctcagca
gaggagagtaaagacaccaaaagcgagtcgactccgggacagacggactacgatccggcc
aggccgggctaccatcccgtggaccacgcctgctggaagcagggccagaaagtcccgtac
ttggcggtggctcgcacctttgagaagattgaggaggactctggcaggctgaggaacatc
gagactctgtcgaacctgctccgctcggtgctgctgctctccccagacgacctgctgtgc
tgtgtgtacctgtgtttgaaccagctgggtcctgcctacctggggatggagctaggcatt
ggagagacgctgctgatgaaagctgttgctcaagcaactgggcgacaattggacaaaatc
aaagcggaggcacaggagaagggagacttgggcctcgtggctgagagttcccgtagcaac
cagcgcatgatgttccaaccggccagtctgactgccgggggcgtgttcaggaaattgaag
gaaatcgccagcatgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggc
ctctttgtggcatgccgcttttccgaggcccgctacatagtcaggtccctggctgggaag
ctgaggataggcctggctgagcagagcgtcctatcagcactcagcctggcggtgtgcttg
accccacctggacaagacttccctcccgctgtgatcgatgcagggaaggggatgagcgcc
gagagcaggcgggcatggatcgaagagaagactctgattctcaaacagacttattgcgag
atgcccaattacgacatcctcatcccagtgctggtaacagagggcatagaccaactgccc
aatcactgcaagctcactcctggtgtgccactgaggcccatgttggctcaccccacaaag
ggcgttggcgaggtgctgaagaagtttgacgaggcggcgttcacctgcgagtacaagtac
gacggcgagcgtgcccagattcacattctggagagcggcgaggttcggatattcagccgc
aaccaggaggacaacaccagcaaataccccgacatcatctctcgcatccccaaggtgaag
aaggactcggtggtctcctgcgtcctggactccgaggccgtcgcctgggaccgtgagaag
aagcagatccagcccttccaggtcctcaccacccgcaagagaaaggacgtggatgcctcg
gagatcaaagtgcaagtgtgcgtgtacgcctttgacctcctctaccttaacggcgagtcc
ctggtgagacagccgttgtgtcggcgtcgggctctgctgagagaaagcttcacggaggtg
gagggagagtttgtgttcgcccgatacatcgactccgacaacaccgacgccatcgccgag
ttcctggagcagtctgttcgagattcctgcgaggggctgatggtgaagactctggagaaa
gacgccacctatgaaattgccaagcgctctcataattggctcaagctgaagaaggactac
ctggagggggtgggagacacgatggacctgtgtgtgatcggtgcctacctggggaagggc
aagcggacgggcacctacgggggcttcctgctggcgtgctacgacgaggagaacgaggag
ttccaatccgtctgcaagatcggcacaggtttcaaggatgaagatctggagcagcattac
aagtacttaaaggaccacatcctgcccaagccgcgcgcctactaccgcatcgagccctcg
gcggagcccgacgtgtggctggacgccgtgcaggtctgggaggtgaagtgcgccgacctg
tcgctgtcgcccgtctacaaggccgccatgggattggtggatccggagaagggcatctcc
ctgcggttccctcgattccttcggatcagagacgacaagaagcccgaggacgccacgacc
ggagcgcagatcgcggatctttacaagaggcagcagcaaattcaaaaccagggggagaag
gccgatccagaggacttctactga
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