KEGG   Scophthalmus maximus (turbot): 118311211
Entry
118311211         CDS       T09850                                 
Name
(RefSeq) histone-binding protein RBBP4 isoform X1
  KO
K10752  histone-binding protein RBBP4
Organism
smau  Scophthalmus maximus (turbot)
Pathway
smau03082  ATP-dependent chromatin remodeling
smau03083  Polycomb repressive complex
smau04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:smau00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    118311211
   03083 Polycomb repressive complex
    118311211
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    118311211
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:smau03036]
    118311211
Chromosome and associated proteins [BR:smau03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     118311211
  Histone modification proteins
   HAT complexes
    HATB complex
     118311211
   HDAC complexes
    Sin3A-HDAC complex
     118311211
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     118311211
    PRC2.2
     118311211
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     118311211
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    118311211
  Chromatin remodeling factors
   NuRD complex
    118311211
   NuRF complex
    118311211
   NuRF complex (fruit fly)
    118311211
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_EML Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 WD_LRWD1 Beta-prop_WDR19_1st WD40_RFWD3 ANAPC4_WD40 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st eIF2A Beta-prop_IFT140_1st Beta-prop_SPT8 NBCH_WD40 MIOS_WD40 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 118311211
NCBI-ProteinID: XP_035490739
UniProt: A0A2U9BM93
LinkDB
Position
5:1537842..1544056
AA seq 426 aa
MADKEAGAYDDAVEERVTNEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVSRPEGK
DYSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQLDASHYDSEKGAEFGGFGSVTGKIEIE
IKINHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDASGECRPDLRLRGHQK
EGYGLSWNSNLSGSLLSASDDHTICLWDISAVPKEGKIVDAKTIFTGHTAVVEDVSWHLL
HESLFGSVADDQKLMIWDTRSNYTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTV
ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPED
AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAT
EPEASA
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggcggacaaggaagctggtgcatatgatgatgcagtggaggagagagtgacaaacgag
gagtacaagatctggaagaaaaacacccccttcctgtatgacctggttatgacccatgct
ctggagtggcccagcctcactgctcagtggctgcctgatgtctccaggccagaggggaag
gattacagtgtgcaccggctggtgctaggcactcatacatctgacgagcagaatcatctg
gtcattgccagcgtccagctgcctaatgatgacgcccagttggatgcttcacattacgat
agtgaaaaaggagcagagtttggaggcttcggctcagtgactggcaagatcgagatagaa
atcaagataaaccatgaaggagaggttaaccgtgcccgctacatgccacagaacccctgc
atcattgccaccaagacccccacttcagacgtgcttgtgtttgattacaccaagcatccc
tccaagccagatgcttctggagaatgtcgccctgatctgcgcctcagaggtcaccagaaa
gagggctatggtctctcctggaattcaaatctgtctggctctctccttagtgcgtcagat
gaccatacgatctgtctgtgggacataagcgctgttccaaaagaggggaagatagttgat
gcgaagacgatattcaccggtcatacggctgtggtggaggacgtctcttggcacttgctt
cacgagtcactctttggatctgtcgcagacgaccagaagctcatgatttgggacacgcgt
tcaaactacacctccaaacccagccatgctgtggatgcccacacagcagaggtcaactgt
ttgtcattcaacccttacagcgagttcatccttgccaccggctctgcagacaaaactgtg
gctctttgggacttgagaaacctgaaattgaagctgcattccttcgagtcgcacaaggac
gagatcttccaggttcagtggtcacctcataatgagaccatattggcatccagtgggaca
gaccgtcgcctcaatgtctgggatctcagtaaaattggagaggagcagtccccagaagat
gcagaggatggcccccctgagctgctgttcatccacggaggccacacagccaagatctct
gacttctcctggaaccccaatgagccatgggtcatttgctctgtgtccgaagacaacatt
atgcaagtgtggcaaatggcggagaacatctacaacgacgaagatcctgagggtgcaaca
gaacctgaagcctcagcgtaa

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