Scophthalmus maximus (turbot): 118311951
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Entry
118311951 CDS
T09850
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03030
DNA replication
smau03410
Base excision repair
smau03420
Nucleotide excision repair
smau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118311951 (rfc1)
03410 Base excision repair
118311951 (rfc1)
03420 Nucleotide excision repair
118311951 (rfc1)
03430 Mismatch repair
118311951 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smau03032
]
118311951 (rfc1)
03400 DNA repair and recombination proteins [BR:
smau03400
]
118311951 (rfc1)
DNA replication proteins [BR:
smau03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118311951 (rfc1)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118311951 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_5
Rad17
RuvB_N
AAA_30
AAA_14
AAA_17
AAA_33
AAA_16
AAA_18
nSTAND3
BRCT_2
RNA_helicase
AAA_7
NTPase_1
AAA_19
Nexin_C
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
118311951
NCBI-ProteinID:
XP_035492017
LinkDB
All DBs
Position
8:11410595..11420435
Genome browser
AA seq
1185 aa
AA seq
DB search
MDIRRFFAPTAAKKPPSNGNMRAEEEEEEEKKRRRRSKPLSPAEVVKEKKKETSKVKSSK
KEEKCKDGEKKRKKRGVIESDSSEEEPVRKSKKSPKGKVKSSKAAPPAKKDPVQYVSETD
SDSDNFQSLKKVSQTKKDNTSKQTKSQAEGARLGPKPPVKSSTTQVKTGLKSPPALITPK
KVTPPQPKHTPTSVLDYFGGGTIQRSDKKLVASTKRKAPTQDTDDLISDEEIARQLQMDQ
DMEMEKQVHEDEEFARTLALLDEEPQAKKARKGSDEKQAPAVIPKKSCTDSAAGSTSSLS
KTNRSVLEDVVSPSPQKNLSSLKASSKLAMMKKRDQEKDAGPKSKTPMISPTKIKTSPRK
EPIASSSSDVKFTPKTGTTPTALKTSPKKPESTSTSPDDAEKKKVNSAAFRNFLNRDGPR
ALGSKEIPKGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSKKTTYMVQGR
DSGVSKIEKAESFGTKILDEDALLELIRTKPGKKSKYEIAAEAEVSKSKASKTRTPPGQA
SKSTPKAQKISPSKGNSRSPHTPSPSKTGLGQGHGSRTTPSGRGSGHKTRRELGLSSSRS
PSAPEPSPRSRTAEDASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQSWHKSHSATT
PKATAKFGKFGGGKDDGSSFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSQK
NLKQVVAESLNNTSIEDFYKGTSQTVSNKHVLIMDEVDGMAGNEDRGGIQEMIGLIRSSK
IPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPALNEIIL
ASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAASARKDMKLGPFDVCRKVFVSGEDTSHM
SLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGDLKSHLVLLSKTADSISDGDLVDRQI
RSRQNWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKNSSTSKHSRIVQELASHMSL
KTLSSRQAVNLDYLHYLRQALLSPLQRLGAEGASQAVQLLDNYHLIKEDVDSIMEISVWG
GQADPYSKLDSKVKAAFTRAYNKEVHLTPYSLQTVKKGRRGGAGGESEQGGEDVDNGQQE
SEDEGEGLKADAMIKQKKAKAPKESKPKKEDSGKGKGKGKGKAKK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggacatcagacgcttcttcgcaccgactgcggcgaagaaaccgccttcgaatgggaac
atgagggcggaggaggaggaggaggaggagaagaagaggaggaggaggagcaagccgctg
tcaccagccgaggtcgtgaaagagaagaagaaagagacctcaaaggtcaaaagctccaaa
aaagaagagaaatgcaaggatggtgagaaaaaacgaaagaagcgcggcgtcatagagtcg
gactcgtcggaggaggagccagtgaggaagtcaaagaaatcccccaaagggaaagtgaag
agcagcaaggcagcgccgcctgccaaaaaagatcctgtgcagtacgtctctgaaacagac
tcggacagtgacaactttcaatccttgaagaaggtctcacaaaccaagaaggacaacacg
tccaaacagacaaagtcacaagcggagggcgctcgtcttgggccgaagcctcctgtcaag
tcctccaccacacaggtgaaaactgggctgaagtcccctccggcgctcatcacccccaag
aaagtcacgcctcctcagcccaaacacactcccacctcagtattggactacttcggcggt
gggactattcagcgctcggacaagaagctggttgccagcaccaaacgaaaagccccaact
caggacacagacgacctgatcagtgatgaggaaattgccagacagctgcagatggatcag
gacatggagatggaaaagcaggtccacgaggacgaggagtttgccaggacgctggccctg
ctggatgaggagccacaggcaaagaaggctcgtaaaggctcggatgaaaaacaagcccct
gccgtgattcccaaaaagagctgcacagactctgctgctggcagcacgagcagcctgtcg
aagaccaaccggagcgtgttggaggacgtggtcagtccgtctcctcagaagaacctttcc
tctctcaaagccagctccaaactggccatgatgaagaaaagggaccaagagaaagacgca
gggccaaagagcaaaacccccatgatttcacccacaaaaattaaaacgtctcccagaaag
gagcccatcgcctcatcaagctcagacgtgaagtttacacccaaaacaggaacaacgccc
actgcacttaaaacttctccaaagaaaccagagagcacaagcacgagtcccgatgacgct
gagaagaagaaagtcaactctgcagctttcaggaacttcctcaacagagatggaccacga
gctctgggctccaaggaaatcccaaaaggagcagagaactgtttggagggctgcgtgttt
gtgttgacgggagtcctggagtccatggagagagatgacgccaaatccttgatcgagcgc
tacggaggcaaggtgacgggcaacgtcagcaaaaagaccacctacatggtgcagggcagg
gacagcggggtctcgaagatcgaaaaggccgagagttttggaaccaagatcctggacgag
gacgctctgctggagctaatcagaaccaaaccaggaaagaagtccaagtatgagattgct
gcagaggcagaggtcagcaaaagcaaagcctcaaaaaccaggactccacctggtcaagca
tcaaagagcacccccaaagcccagaagatctccccttcaaagggcaactccaggtcccct
cacaccccaagcccgtcaaagaccggcctgggacaaggtcacggcagcaggactactcct
tccgggagaggctcaggccacaagacccggagggagctcggcctttcctcctcccgttcg
ccttcagccccggaaccatccccccgatcgaggactgcagaggacgccagtctgctgtgg
gtggacaagtaccgtccgcgctctctgaagactgtgattggccaacagggggatcagagc
tgtgccaacaagctgctgcggtggctgcagagctggcacaagagccacagtgccaccact
cccaaggcaacagcaaagtttggtaagtttggaggagggaaagatgatggatcatcattt
aaagctgctctgctctctggacctccgggtgtgggaaagaccactaccgccgccctggtc
tgtgaggagttgggcttcagctacgtggagatgaacgccagctgtactcgcagccaaaag
aacctaaagcaggtcgttgccgagtcactaaacaacaccagcatcgaggacttctacaaa
ggcacgtctcagacagtgagcaataaacacgtcctgatcatggatgaggttgatggcatg
gctggcaatgaggaccgtggaggaattcaggagatgatcggtctgatcagaagttcaaag
attcccatcatctgcatgtgcaatgatcgtaaccaccagaagatccggtccctggccaac
tactgctttgatctgcgcttccagaggccacgggtggaacagatcaagggagccatgatg
tccctcgctttcaaagaagggatcaagatcccgcccccagctctcaacgaaatcatcctc
gcttccaatcaggatgtccgacaggtgatccacaacctgagcatgtggtcagcgaaagac
aaggtgatgacgtacgaccagtgcaagtctgacgccgccagcgcccgcaaggacatgaag
ctggggccattcgacgtttgcaggaaggtgttcgtgtcgggcgaggacacttcccacatg
agcctcatcgacaagtccgacctcttcttccacgactactcgctcgcgccgctcttcgtc
caagagaactacctgcacgttcgtccggcggctgccggtggagatctgaagtcccacctg
gtgttgctcagcaagacagcggactccatctctgacggagacctggtggacagacagatc
cgctctcggcagaactggtcactgttgccaacccaggccatctatgccagtgtgttgcca
ggcgagctcatgagaggctacatgagtcagttcccgacgttccccagctggctcggcaag
aattcctccaccagcaaacattcccgtatcgttcaggagctggcatcacacatgagtcta
aagacattgagcagcagacaggcggtgaacctggactacctacactacctgcggcaggcg
ctgctcagcccacttcagaggctcggagcggagggtgccagtcaggctgtgcagctgctg
gacaactaccacctcatcaaggaggacgtggacagcatcatggagatcagcgtctggggc
ggacaggccgatccctactccaaactggactctaaggtgaaagcagccttcacccgagcc
tacaacaaagaagttcacctgacgccgtactccctgcaaactgtgaagaagggccgccgc
ggtggagccggcggggagtcggagcagggcggggaggacgtggacaacggacagcaggag
tccgaggatgaaggggagggcctcaaagccgacgccatgattaaacagaagaaggccaag
gcccccaaggagtcaaagccgaagaaagaagattctgggaagggcaaaggcaaggggaaa
ggcaaggctaagaaatga
DBGET
integrated database retrieval system
