Scophthalmus maximus (turbot): 118312371
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Entry
118312371 CDS
T09850
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118312371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smau03041
]
118312371
03009 Ribosome biogenesis [BR:
smau03009
]
118312371
Enzymes [BR:
smau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118312371
Spliceosome [BR:
smau03041
]
Complex A
U1 snRNP components
U1 related factors
118312371
Complex B
118312371
Ribosome biogenesis [BR:
smau03009
]
Eukaryotic type
Pre-60S particles
Helicases
118312371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
118312371
NCBI-ProteinID:
XP_035492797
LinkDB
All DBs
Position
8:complement(14983606..14991418)
Genome browser
AA seq
634 aa
AA seq
DB search
MPGFPDRDRGRDRGYGGGPPRFGGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQ
KNFYQEHPDATRRTLQEVELYRRSKEVTVKGRDCPKPIMKFHEAAFPSYVMDVISKLNWT
DPTSIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAP
TRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD
EITRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVIN
YDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMA
EDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSFRDRDSDRGFGNGPKSAFGGGKAQNG
SSYGGNSGNSSGSYGNNYSNSNGQGNFGGPANQVGAFGNQSFQGPPQFGAMQRAGQNGMN
HPPFPFNSQPPPQAQQAPPPPPMVPYPMPPPFPQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtttccagacagagatcgtggcagagatagagggtatggtggaggaccccct
cgttttggtggtggtggtggaggaggcaataggggcggaccacctccaggaaagtttggc
aaccctggtgaaaggctgcggaagaaacactggaaccttgacgagctcccgaagtttcaa
aagaacttctaccaggaacacccagatgccacccgcagaacacttcaagaggttgagctg
taccgaagaagcaaagaagttacggtcaaaggcagagattgccccaaaccaatcatgaaa
ttccatgaagctgcatttccaagctatgtcatggatgttataagcaaactaaactggact
gacccaacctcaattcagtctcaggggtggccagttgccctcagtggcaaagacatggtt
ggcatcgctcaaactggctctgggaaaacccttgcataccttctgccggcaattgtgcac
atccaacatcagccattcttggagcatggagatggacctatttgcttagtgctggcacca
acccgtgagctggctcagcaggtgcaacaagtggccgctgaatacggccgggcgtcccgt
ctcaagaccacctgcatctatggtggtgcacccaaaggacctcagatcagggaccttgag
aggggtgtcgagatttgcatcgctaccccaggtcgcctcattgacttcttggagtgtggc
aagactaacttgcgtcgttgcacctatctggtgctggatgaagctgaccgcatgctggac
atgggctttgaacctcaaatccgcaagatagttgatcaaatccggccagaccgtcagact
ctgatgtggagcgccacctggcctaaggaagttcgccagctggctgaggacttcctgaag
gactatgtccagatcaacattggagcactgcagctcagtgccaatcacaacatcctgcag
atagttgatgtttgcaatgacatggagaaggaggacaaactgatccgtttgctggaggag
atcatgagtgaaaaggagaacaagaccattatttttgtggagaccaaaaggcgttgtgat
gagatcaccaggaggatgagacgagatgggtggccagcaatgggaattcatggagacaaa
agccagcaggagagagactgggtccttaatgagttcagatatggcaaagcaccaatcctc
attgctacagatgtggcctcccgtggcttagatgtggaggatgtgaaatttgtcatcaat
tatgactaccctaactcctctgaggattatatccaccgcattggccgcacagcccgaagt
caaaaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagcaagtgac
ctgatctctgtgctccgcgaggccaaccaggccattaaccccaagctgatccagatggca
gaggacagaggaggtcgtggaagggggggaagaggaggctacaaggatgaccgtcgtgat
aggtattctggaggtgggaggagcaactttggtggtagtagcttcagggatagggatagt
gatagagggtttggcaacgggccgaagagtgcctttggtggcggtaaggcacaaaatggt
agcagctatggaggcaacagtggtaactctagtggcagctatggcaacaattacagcaac
agcaatggacagggtaattttggtgggccagcgaaccaggtgggtgcttttggtaaccaa
agctttcaggggccccctcagtttggggccatgcagagggccggtcagaatggcatgaac
cacccgccattcccgttcaactctcagccaccaccacaggcccaacaggcaccaccccca
ccgccgatggtgccctaccccatgccaccacctttcccacagtag
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