Scophthalmus maximus (turbot): 118312397
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Entry
118312397 CDS
T09850
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118312397 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118312397 (patl1)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118312397 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
118312397 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
118312397
NCBI-ProteinID:
XP_035492851
LinkDB
All DBs
Position
8:complement(19229030..19240629)
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AA seq
829 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDGGLVAEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAGLDEQPAV
GAEGGGGGGMGRESDLGGVENSSSTHLPSSLGHHPLPSSLPSLNFSSSSSGLPPPDVEDR
GGEGDLAESLARLILEADPAIAGVGATERPSPSLIATGASLSALHGLDRPRVLQQHSSIP
HPHQPPHHHQHQLPPGPSTTGLPPGPPPSSMLSYQQQQHLLRRGPAPLGQMNSHSIWENS
MGFGPVSVTPGLVTHMEDSPLMSIIKEVGLPKLPPQGRNDEGRDLSERVPPPRSSSPVIG
SPPVRAVPIGTPPKQPMSHSLNHQTHHPAAVHVRAPVQHRYPPPFPERLSPNTLLNIANS
PLCRGPFPPGVGPVLSQIQRAQLLNSQVAGFPRGGPLLPGAGGFRPFFGGPPPPHGHRMG
PLPPHGPPNHTPPIRHNTTHLHPQHRRMLTQRMQSRGGDRGRTGGDRRSRDPYSNLMTQK
EKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLITPQVAKVE
HTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMY
SLLLEVQDFEKRFVQAPEEDREALLEQHKTNTVQLCNSLRDKEWDDRVSDEQCVMIMSVR
KGKRLISRLLPILPSPQATAIVMAIARNLPALAKKDKQDQVLCWLVEPLSAVIQSLSSSA
LTDLLQELQGSEGQLATVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSV
TRELLSVPSSSLSPPLFTPANLLSLFSRYVDRQRLELLQNKLQISALSR
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgacgactgcacgctggaggaggaagacggtggattg
gtcgcagaggaagatgaaatcgatcagttcaacgacgatacttttggagctggggccatt
gatgacgactggcaggaagaacacaaacgccttgctgggctcgatgagcagcctgcagtc
ggagctgagggaggaggaggaggggggatgggaagagagtcagatttaggaggagtggag
aactcatcctctacccatctcccctcatctttgggccatcacccccttccatcttccctt
ccttcactcaacttctcctcgtcttcctctggacttcctccaccagatgtcgaggataga
ggaggggaaggtgacttggctgagtccctggccagactcatcctggaggcagacccggcc
atcgctggggtcggagccactgagaggccctctccatcgctaatcgccacaggagccagc
ctgtccgctctgcacggcctggaccgacccagagtcctgcaacagcactcatccatccca
catccccaccagcccccccatcaccaccagcaccaactgcctcctggcccctccactaca
ggccttcctcctggtcctcctccatcatcaatgctcagctaccaacagcagcagcacttg
ctacgcagaggccctgctcctctcggccagatgaactctcacagtatctgggagaacagt
atggggttcgggccggtcagtgtcaccccaggactggttacacacatggaggatagtcca
ctaatgtctataatcaaagaggtgggccttccgaaattgccgcctcagggtcggaacgat
gaaggtcgggatttgtcagagagggtcccacccccgcgctcttcttcccctgtgattggc
tctcctccagtgagggccgttcctattgggacaccacccaagcagccaatgagccacagt
ctaaatcatcagactcaccatcctgcagcagttcatgtgagagccccggtccagcacaga
taccctcctcctttccccgagcgtctgtcacccaacaccctcctcaatatagctaactct
ccgctgtgtcgcggtccgttcccccctggagttggtccagttctgtctcagattcaacgg
gcccagttgctcaactctcaggtggctggtttccctcgcggcggaccattgctaccaggt
gctggaggtttccggccattcttcgggggtccgcctcccccacatggtcaccgaatgggc
ccgctgccccctcacggcccccctaaccacacaccgcccatccggcacaacaccacccac
ctccaccctcagcaccgccgcatgctcacccagcgcatgcagagcagaggaggggatcgt
ggaaggactggaggggaccggcgcagcagggacccctacagtaatctgatgacccagaag
gagaaggagtgggtaaccaagatccagatgatgcagctgcaaagtaccgacccctacctg
gatgactactactatcagaattactatgaaaagatggagaaacgtcaggaacgagagcga
gacagcagcaagaaagagcacaccaccaaactcatcactccgcaggtcgccaaggttgaa
cacacctacagaccagttcagtttgcaggctctctgggtaaactgaccgtttctagtgtc
aacaacccccgcaagatgattgacgctgtggtgactactcgcacagatgacgaggagaaa
agagagaaacaggtttggaacaagaggcgacagatcctctacactgtggagaagatgtac
agtttgctgctggaagttcaagactttgagaaacgttttgtccaggcgccagaggaggac
agggaggccctgctggagcagcataaaaccaacacagtgcagctgtgcaactctctgcgc
gacaaggagtgggacgaccgcgtaagtgacgagcagtgtgtgatgatcatgtcagtgagg
aagggcaagaggctcatatccaggctcctccccatcctgccctcaccccaggccaccgcc
attgtcatggcgattgcacgcaaccttcccgccctggccaagaaggacaagcaggaccag
gtgctatgctggttagtggagccgctgtctgcggtcatccaatccctgtcgagctccgcc
ctcacagacctgctgcaggagcttcaaggcagcgagggccaactggccacagtactgcac
aacaagtttggtgtgacgctgctgtatctgatcctgagtgaaggagagcggatgcaaagc
tcagaccccaactgtcaactcatggacgacaatcgatggactgagttggtgttttcggtg
acacgggagctgctcagtgttccctcctcgtccctctccccccccctcttcacccctgcc
aacctgctctccctcttctcacgctacgtcgatcggcagaggctggagctgttacagaac
aagttacagatctctgctttgtctaggtag
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