Scophthalmus maximus (turbot): 118312904
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Entry
118312904 CDS
T09850
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118312904 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118312904 (taf5)
03036 Chromosome and associated proteins [BR:
smau03036
]
118312904 (taf5)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118312904 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
118312904 (taf5)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
118312904 (taf5)
STAGA complex
118312904 (taf5)
TFTC complex
118312904 (taf5)
SAGA complex
118312904 (taf5)
SLIK complex
118312904 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
VPS8_N
eIF2A
CDK5RAP3
LisH_TPL
RAB3GAP2_N
LisH_PAC1
PROPPIN
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
118312904
NCBI-ProteinID:
XP_035493865
LinkDB
All DBs
Position
8:18241435..18246708
Genome browser
AA seq
754 aa
AA seq
DB search
MAAVQGGLVDANEEKDIKSEPANDTWANNNANDGRLPSASPGASAAAGGNKTAAVATAAA
PEDQQTLLAVLQFLRKNKLTESVEILRREAGLPEDSLESKGADSSGAGSGGAAGGVDSEG
GEASSLLSRVTVSSSAAPPAPTKAAAGEDQPDVNVVLSAYSQQGDPVLYPVYYSGLKRFI
ETVLDCHRAELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFCGDQECYYGDDLRILSSL
SKREHMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGI
PRSKGQIDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKP
KKDSMGSKSKKQDPNAPAQTRIPLPELKDSDKLDKIMYMKEATKKIRLGPDNLPSICFYS
FLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLE
RIMDEKTASESKILHGHSGPVYGISFSPDRNYLLSSSEDGTIRLWSLLTFTCLVGYKGHN
YPVWDTQFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADITCTRFHPNSNYVATG
SSDRTIRLWDVLNGNCVRIFTGHKGPIHTLAFSPNGKFLASGATDGRVLLWDIGHGLMIG
ELKGHTDTVYSLRFSRDGEILASGSMDNTVRLWDATKAFDDLETDDFTAATGHIHLQDNS
QELLLGTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtctggtcgacgcgaacgaagaaaaggacataaaatcggaa
ccagcgaacgatacctgggcaaacaataatgcgaacgacggacgactgccctctgcatcg
cccggcgccagtgctgcggccggaggcaacaaaacggcggcggtggcgacggcggcagcc
ccggaggaccagcagacgctgctggcggtcctgcagttcctcaggaagaacaaactcacc
gagtccgtcgaaattctgcgtcgcgaagcgggattaccggaggactctctggagtcgaag
ggggccgactcgtccggggccggctcgggaggcgccgcgggcggtgtggactcggaaggc
ggggaggcgagctccctcctcagccgggtgaccgtgtcatcctccgccgctcctccggcg
ccaacaaaagctgcagctggggaggatcagcccgatgtcaacgtggtgctgtcagcctac
agccagcagggagacccggttctgtatccggtgtactacagcggcctgaagaggttcata
gaaactgttctggattgtcacagagccgagctgtctcaggtcttctacccgctgtttgtt
cacatgtatctggagctggtgtacaataatcacgagagcgaggccaaggctttctttgaa
aagttctgtggggaccaggaatgctattatggggacgacttgcgcattttgtccagcctg
tcgaagagggagcacatgagaggcaacgagaccctgcttgacttccgcaccagcaagttt
gtcctgcgcatctcccgtgattcgtaccagctgctgaagagacacctgcaggagcgtcag
aacaaccagatctggaacattatccaagagcacctctacattgacatctttgatggcatt
ccacgcagcaagggccagatcgatgccatgtcgggcagcttggctggagaggccaagcga
gaggccaacaaggcaaaggtttactatggattgctgaaggagccggaaattgagctgcca
cttgatgatgaggatgaggaggcagagaacgaggagggtaaacccaaaaagaagaagcca
aagaaggacagtatgggctccaagagcaagaagcaggatcctaatgcacctgcacaaact
aggatacctttgccagaattgaaggattcagacaagctggacaagatcatgtacatgaag
gaggccaccaagaaaatccgcctgggaccagacaacctcccctccatctgcttctactct
tttctaaatgcgtaccagggtttgactgcggtagacttcacagacgactccagcctgatt
gcaggaggctttgctgactccacagtgcgggtttggagtgtcacgccgaaaaagctccgc
aaggtcaagtctgcagcagacttgaatctgattgacaaagagtctgacgatgtgctggag
aggatcatggacgagaagacagccagtgagtcaaagatcctccatggacacagcggcccg
gtgtatggcatcagcttcagcccagacagaaactacctgttgtcaagttctgaagacggt
acgatcaggctgtggagtttgctaacatttacttgtctagtgggctacaagggccacaat
tacccagtgtgggacacccagttttctccccatggctactattttatctccggaggacat
gacagagttgcccgtctgtgggcgacggatcactaccagcctctacggatgttttctggt
catctagctgacatcacttgcacccgtttccaccccaactccaactatgtagccacaggg
tcgtctgaccgcaccatccgcctctgggacgtcctgaacggaaactgtgtccgtatattc
acagggcataagggtcctatacatacgctggctttttctcccaatgggaagttcttggcg
tctggagccactgatggaagagttcttctctgggacattggtcacggactgatgatcgga
gagctcaaaggtcacacagataccgtctattccctcaggttcagcagggatggcgagatc
cttgcctccggttccatggacaacacagttcgtctttgggacgcaacaaaagcattcgat
gatctagagactgacgacttcacagcagccacgggacacattcatctacaagataactcc
caggagcttcttctgggcacctacatgactaaatccacacctgtcatacatcttcacttc
acccgaaggaacctgctgctggctgctggcgcctacaatccataa
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integrated database retrieval system
