Scophthalmus maximus (turbot): 118312983
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Entry
118312983 CDS
T09850
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a isoform X1
KO
K16499
protocadherin 12/17/18, delta 2
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
118312983 (pcdh18a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smau04515
]
118312983 (pcdh18a)
Cell adhesion molecules [BR:
smau04515
]
Cadherins
Protocadherins
118312983 (pcdh18a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_FAT4_N
Ig_Cad99C_N
Ig_CLSTN
TMEM154
MpPF26
Cadherin_C_2
Syndecan
Motif
Other DBs
NCBI-GeneID:
118312983
NCBI-ProteinID:
XP_035493998
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Position
8:24095255..24103484
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AA seq
1195 aa
AA seq
DB search
MQPGKMKGLFLTRVWKVLVVLALATQHIAGKTLKYQIFEEQKVGTVIARLKDDVADVLAK
LPSSVSLRFRAMQRASSSFLAVREQDGEISIRTKIDREKLCEKNLNCSIQFDVLTLPTEH
LQLFHVEVEVLDINDNAPQFARAVIPIEISESAAVGARIPLDSATDPDVGENSLYTYALE
PSSFFKVDIQSRTDGAKYAELVVLRELDREVRSSFELQYTASDRGSPARTGTTLLKISVA
DSNDNSPIFDKSSYVINLPENSPVGTLLVDLNATDADEGTNAKIVYSFSSHVSPKVMETF
KMNPDSGHLTLIRRVDYETVSSYDIDVQAQDMGPNSMPAHCKILVKVVDVNDNKPDISVN
LMTSQGNGDAAYISEASALDTFVALVRVEDLDSGLNGEVECKLHGQGYFKLQKTYENNYM
ILTNVSLDREKRSEFSLTVVAEDRGTPSLSTVKHFTVHVTDENDNAPRFEKGRYEIFKSE
NNAPGAYLSSIMATDPDLDANGQVSYSILENSVHGSSISTYVTIDPSNGAIYALRTFDRE
DVSRISFVVQAKDAGKPSLLSNATVILNILDENDNPPVIVVPQLWNFTADVPASKFTEAG
HLVTVVRATDLDTGVNAELICSIVSGNEEGFFLIDPRTCEIHANASLENFPHENAELTVV
VRDQGSESLSAKAVLKITLYENMENHVQVMDQGESPLDASLIIIISLGAICAVLLVIMVV
FAARCNREKKDNRNSYNCRVAESTHQHHPKKPSRQIHKGDITLVPTVNGTLPIRAHHRSP
SASPPMDRAQMGSRQNHHSRQSLNSLVTISSNHIPESFALELAHATPPVEQVSQLLSMLH
QGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDCDMGRESPVDRLLLG
EGFSDLIHLEIHHRLHPAMRLCTDECRVLGHSDQCWMPPLSSPASSCDYRNNMYIPGEES
SQQPPLDDDQSSVDSERRKSFSTFGKESGSEEAGAGGVVAGGGSDACAAGGGAGSLLTEM
NSVFQRLLPPNADSYTECTETSPPSSSSTAERGGGRGGNAAANHSNNAVPQDNRRGLLPG
GKGPAYPPGVAAWAANTHYLNPGNGSVATNHVSPASSSSSSAASTAASTNGQPPHLKWLP
AMEEIPENYEEDDFDGVFHPGHQGGKRSEGRHEAGMDSSELVHEINKLLQDVRQS
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccaggaaaaatgaagggactctttctgacaagagtgtggaaagttctggttgtt
ttggcgctggcaacgcaacacatcgccggcaagacgttgaaatatcaaatcttcgaggag
cagaaggttggcacggttatcgcccgcttgaaggacgacgtcgcggacgtgctggccaaa
cttcccagctccgtgtcgctccgcttccgagccatgcagagggccagctcgtcgttcctc
gcggtgcgcgagcaggacggagaaatcagcatcaggaccaagatcgaccgcgagaaactc
tgcgaaaagaatctcaactgttccattcagttcgacgtgctgaccctccccaccgagcac
ctgcagctgttccacgtcgaggtggaggtgttggacatcaacgacaacgcgccccagttc
gcccgcgccgtgatccccattgagatctccgagagcgcggccgtgggggcgcgcattccc
ctggacagcgccacggaccccgacgtcggggagaactcgctgtacacgtacgccttggag
cccagcagcttcttcaaggtggacatccagtccaggaccgacggcgccaaatatgcagag
ctggtggtgctcagggagctggaccgggaggtgcgctccagtttcgaacttcagtacacg
gcgtccgacaggggctcgcccgccagaacgggcacgaccctcctcaaaatcagcgtcgcc
gactcgaacgacaacagcccgatttttgacaagtcgtcgtatgtcataaatctcccggaa
aattcacctgttggcacgctgctcgttgacttgaacgccacggacgcggacgagggcacc
aacgccaaaatcgtctactcgttcagcagtcacgtgtcccccaaagtcatggagacgttc
aagatgaaccccgacagtggccacctgaccctcatccggcgcgtggactacgagaccgtc
agttcctacgacatcgacgtgcaagcgcaggacatgggtccgaactccatgcccgcccac
tgcaagatcctggtcaaggtggtcgacgtgaacgacaacaaaccggacatcagcgtcaac
ctcatgacctctcaggggaacggggatgcggcgtacatatccgaggcttccgctttggac
acgttcgtggccctggtgagggtggaggacctggactccggcttgaacggggaggtcgag
tgtaaactacacggacagggctatttcaaactgcaaaagacctatgagaacaattacatg
attctgaccaacgtgtccctggacagagagaagaggtcagagttcagtctgacggtggtg
gcagaggacagggggacgcccagtctctccacagtcaaacatttcacagtgcacgtgacc
gatgagaacgacaatgcgccgcgtttcgagaaggggcggtatgagatctttaaatcggag
aacaacgcccccggagcatatctgagctccatcatggccacagaccccgacctggatgcc
aatggacaggtgagctactccatcttggagaactctgttcacgggagctccatctccacc
tacgtcaccatcgacccctcaaacggcgccatctacgcgctgcgtacattcgaccgcgag
gacgtcagccgcatctcctttgttgtgcaagccaaggatgcggggaaaccatcactcctg
agtaacgccacagtcatcctcaacatcctggacgagaacgacaaccccccagtcatcgtg
gtgccccagctgtggaacttcaccgctgatgtgcctgcgtcaaagttcacagaggccggg
cacttggtgacagtggtccgagcgaccgatctagacacgggggtcaacgcggagctaatc
tgctcgattgtcagcggcaacgaggagggcttcttcctcatcgacccaagaacctgtgaa
atccacgccaacgccagcctggagaacttcccccatgagaacgctgagctgacagtcgtg
gtccgagatcaggggagcgagagcctcagtgccaaggccgtgctgaaaatcactctctat
gagaacatggagaaccacgtccaggtgatggaccagggcgagtctccactcgacgcgtcc
ctgatcatcatcatctccctgggggccatctgtgccgtgctcctggtcattatggtggtg
ttcgccgcgcgctgcaaccgcgagaagaaggacaacaggaactcctacaactgccgggtg
gctgagtccacccatcagcaccaccccaagaagccctcgcgccaaatccacaagggcgac
attaccctggtgcccacggtgaacgggaccctgcccatcagagcccaccaccgctcgccc
tcggcctcgccccccatggaccgggcccagatgggaagccgacagaaccatcacagtcgc
cagtccctgaacagcctggtgaccatctcgtccaatcacatcccagagagctttgccctg
gaactggctcatgcaactccaccagtggagcaagtctcacagcttctgtccatgctccat
cagggccagtaccagcccagacccagtttccgtggcaacaaatactcccgcagctacagg
tatgcattacaagacatggacaagttcagcctgaaggacagtggccgtggggacagcgag
gcgggcgacagtgactgtgacatggggagggaatcccccgtggacagactgctgctgggg
gagggcttctctgacctgatccacctcgaaattcaccatcgactccaccccgctatgaga
ctgtgcacggatgaatgccgcgtcctgggacactctgaccagtgctggatgccccccctc
tcctcgcctgcctcctcctgtgactaccgcaacaacatgtacatccccggggaggagtcc
tcccagcagccaccgctcgacgatgaccagtcctcggttgactcggagcgccgcaaaagc
ttctcgacctttggcaaggagtccgggagcgaagaggccggcgcagggggggtcgtcgcc
ggaggaggaagtgatgcgtgtgcagccgggggaggggctggctccctcctcacggagatg
aactctgtgttccagcggctcctcccccctaatgcggactcgtacacagagtgcaccgaa
acaagccccccatcgtcctcgtcgaccgcggagaggggaggcggacgtggcggcaacgcc
gctgctaaccacagtaacaacgccgttccgcaggacaaccgcagagggttgttgccaggt
gggaaaggtcccgcttatcccccaggtgtggctgcatgggcggctaatacccactatctg
aaccctggaaatggatctgtggcgaccaaccatgtttcccccgcttcctcttcctcttca
tccgcagcctccactgccgcctccaccaatgggcagccgccacacctcaaatggctgccg
gccatggaggaaatcccagagaattacgaggaagatgactttgacggcgtcttccacccg
ggtcaccaaggtggtaagcgcagtgagggccgccacgaggccggcatggactccagtgag
ctggtgcacgagatcaacaagctgctgcaggacgtcagacagagctag
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