Scophthalmus maximus (turbot): 118313101
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Entry
118313101 CDS
T09850
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118313101
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Cyt_c_ox_IV
Motif
Other DBs
NCBI-GeneID:
118313101
NCBI-ProteinID:
XP_035494246
LinkDB
All DBs
Position
8:complement(20211287..20233120)
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AA seq
1637 aa
AA seq
DB search
MDKLTTVRTVSYGGGAGASSRGDPSLSAGGSGGRAASGGSAGTGGSVGMSSGRSGGSGGG
RGSGGVSITTVGASSAEGSAASGGSGAGFRAAGGGGGSYGMSSGLASGARDGKRDGGLVA
VSTVTKTSYSSGGSGEAKRGSSSAVTHSPAFKERKSMSGLAAALPDVFDESSSPNSSPEY
NRKEYGTSIGTSSSATRGRAQSRESEIRARLQSASPPASWTELDDVKRLLRGNHSTSASP
AQSPNNTLPIPRKASVEAWSTAESSDTTTTTTTDQYGSIWPGGVSSSYSYNTIPNNLSTT
TSTLYQSGVQNNRTLSSPYVNSGFSAGSTVYGVQNNLAGTGPTALSPTGASAQIVYGVQK
NASGAGIGTTTVRPSSPTADEAMGKDFKFVLIEKENAPLKKETERLVVTKDSGKQFMSAA
PAMASVTYSEDSLKREKQKLSTSTVEEGTEAKSSALKVATKDKATYAEIKEDESGFGCFS
CCSWWKWLLGLLLSLLLLLGLLFGLIALAEEVKRLKNRVDALEAITGTASARSSRLSASS
GATNIVDPLDSLYFDRSSSGSTLTRSDNTINLGAAGPGGDAGSGPRQDGAALQRTVQNLV
RAELRSDAVRDTLKGERGEPGPKGDSGGLGQKGDGGFPGLPGPPGQMGHPGLDGPRGPKG
SAGEPGSEGPPGQRGREGVMGPRGEAGPPGFGAKGDKGSQGDQGHPGPAGATGPYGPKGD
MGGHGASGSPGATGQKGFQGEAGAPGAKGDRGSPGVSGTKGELGERGPRGPAGEPGQPGQ
QGPAGPKGTKGITGEAGTMGPPGVRGPPGLPGDIGPPGTPGIQGPPGVAGNPGHPGAKGE
SGSPGKIITPMGSDTVAIPGPPGPAGPPGPAGTPGLSGPIGPAGVPGQPGPKGAQGEKGE
EGERGEKGKTGEPGTSVTSSEAVSATRRDRLSSAAGWPGPPGPPGPPGQPGPQGPSGETT
QGSPGRRGPPGEPGVGYPGPPGEKGEPGSFVPTSETFFAGPPGPPGPPGQKGSVGDRGPQ
GYQGEPGQPGLPGEAAVGFPGQPGSRGPQGPQGPSGAQGDTGVPGAPGIPGGSGVGSPGP
TDVGQVIAEYLQSGSIREYLAGPPGPPGPAGAPGNTGDGLVDDVTNRVVAYIQGSGRGYD
GTHGTPGPPGPPGPPGAPGTTQGTDGLVDDVASRVVAYIQSSGGGYDRTPGPPGPPGPPG
AISVNDIINILQREDVRRYVAGPPGPPGPPGDLGLGSPSFNTQEVAERVLSFLADKGVVG
VPGPQGPPGPPGHPGSLSTGYQAVVGPQGPPGPPGVPGLQGPAGPPGPPGLGNYISSDIH
DYLQSVTFRGSPGPPGPPGPEGPPGKMRGLVSYAEQANRESITAERQGFDGGAVRGAMLG
HPGLPGPPGPPGHKGEPGASGAGAGAWNLDSADYSTMAVRVTDYIKSHGLLRDVLRDSER
VVQGPPGPPGLPGIPGQSQWVSSRENVVDVVEYLKSRGVLHDIVREHNSRIFQGPQGPPG
PPGPPGYSRPFGSYGNATALLEYIKTHGLLHDTKGSHGERVVQGPPGPAGPPGPPGYSRV
FGSHANVTDLVEYIKTHGAIVGQPGRPGQKGDVGYPGLNGERGERGLRGPQGPKGQKGDR
GEVPMMTKRRRRRDVGV
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atggacaagctaactaccgtcaggaccgtgagctatggaggaggcgctggagcgagcagc
agaggtgatccgtctctgagcgcggggggctcaggtggaagagctgcgtcaggaggctcc
gctggcaccggcggctcagttgggatgtcgtccggccgctccggcggctccggaggcggc
aggggcagcgggggcgtcagcatcaccactgtaggagcgtcgtctgctgaagggtcagcg
gcctcggggggctccggggcggggttcagggctgccggaggaggaggggggtcctacggc
atgtcctctggtctcgcgagcggcgccagggatggaaaaagagacgggggactcgtcgct
gtctccacggtgaccaagaccagctacagttcaggtggatctggggaagcgaagagaggg
tcgtcctctgcggtcacccattcccctgcattcaaggagaggaagagcatgagcggcttg
gcggcggctctgccagacgtcttcgacgaaagttccagcccgaactcttctccggagtac
aacaggaaggagtatggcacatcaattggaacttcaagttccgccaccagagggagagct
cagagcagagagagtgagatcagagccagacttcagagtgcctctcctccagcaagctgg
acggagctggacgacgtgaagcgcctgctgagaggaaaccactcgaccagcgccagcccg
gcccagtcccccaacaacacgctgcccatccccaggaaggccagtgtggaggcctggagc
acggccgagagctccgacaccaccaccaccaccaccacagaccagtatggcagcatttgg
cccggaggtgtgagcagcagctacagttacaacaccatccccaacaacctgtccactacg
acctccactctctaccagtcaggagttcagaacaaccggacgctcagctctccctatgtg
aacagtggcttctctgccggcagcacagtgtacggcgttcagaacaatctggccggtacc
ggccccactgctctctctcccacaggagccagcgctcaaatagtttatggcgtgcagaaa
aatgcgtctggcgctggaataggcacaaccacagtgagacccagcagtcccactgctgac
gaagccatgggcaaagactttaagtttgtgctgatagagaaggagaacgcccccctcaag
aaggagacggagaggctggtcgtgaccaaagactcggggaagcagttcatgtctgctgcg
cctgcgatggcttctgtgacctactctgaagactccctgaagagagagaagcagaagcta
tcgaccagcacagtggaggagggaacagaagccaaatcttcagccctgaaggttgccaca
aaagacaaagccacatatgcagagatcaaagaggatgagtcaggatttggctgcttctcc
tgctgtagctggtggaagtggctgctgggcctcctgctcagcctgctccttctcctcgga
ctcctctttggactcatcgctttggccgaagaagtgaaacgcctcaagaaccgcgtcgat
gctttggaagccatcactggcaccgcctctgcaaggtccagtcgcttgtcggcctcctcg
ggcgccaccaacatcgtcgacccgctggattccttgtactttgacaggagttcctctggg
tccaccctgacccgctctgacaacaccatcaacctgggtgctgccgggccagggggcgac
gcagggagcgggccgaggcaggacggtgctgccctgcagagaactgttcagaatcttgtc
agagctgaactccgctcagatgctgtgagagatacacttaaaggagagagaggagagcca
ggacctaaaggtgactcagggggactaggacaaaaaggggatggcggtttccctggtctc
ccaggtcctcccgggcagatgggtcatccaggattggatgggccaagaggaccaaaggga
agtgcaggtgagccgggttccgagggtccaccgggacaacggggccgggagggagtgatg
ggcccccgcggagaggctggaccgcccggttttggagcgaaaggagacaaaggatctcaa
ggtgaccaaggacatcccggtcccgccggtgctactggaccttacgggccaaaaggtgac
atgggagggcacggtgcctcaggaagccctggggctactggtcaaaaaggtttccagggt
gaagcaggagcgccaggggccaagggtgacagaggaagtccaggggtgtcaggaaccaaa
ggagagctcggagagaggggaccgcgtggaccggcaggtgaaccaggacaacctggacaa
caaggcccagctggaccaaagggaactaaagggattacaggtgaagcaggtacaatggga
cctcctggtgtgagaggaccacctggacttcctggagatattggccccccaggtacccct
gggattcaaggacccccaggcgtcgctggaaatccaggacaccctggtgctaaaggtgaa
tctggttcgcctggtaaaatcatcactccaatgggctctgatactgtggccatccctgga
cctccgggtcccgctgggcctccgggccctgccgggacccctggtttgtctggtcccatt
ggccctgctggtgtcccaggacaacctggtcccaagggagcacaaggtgagaaaggagaa
gagggagagaggggagagaaagggaaaactggagagcctggcaccagtgtcacaagttca
gaagctgtcagtgccacccggcgtgatagactttcctcagcagcaggatggcctggacca
ccaggacctccaggtcctcctggacaacctggacctcagggtccttcaggtgagacaaca
caaggatcgccaggacgcagaggtcctccaggagagccaggtgttggctatcctggaccc
ccaggagagaaaggagaacctggcagctttgtgcccacatcagagaccttctttgctgga
ccacctggacctccaggacccccaggccaaaagggttcagtaggtgacagaggaccacaa
ggttaccaaggagaaccaggtcaaccaggtcttccaggggaagcagctgttggtttccca
ggtcagcctggatctcggggacctcagggaccacaaggccccagtggcgctcagggtgat
acaggagtccctggagcgccggggatcccgggaggctctggtgtaggtagtcctggacca
actgatgtgggccaggtcattgcagagtaccttcaaagcggttccattagggagtatctg
gccggacctccagggccccctgggcctgcgggagccccagggaacacaggggacgggctg
gtggacgatgtgaccaaccgagtcgtcgcctacatccagggctcaggtagaggatacgac
gggacacatgggacacctggacctcctgggcctcccggtcctccgggggccccagggacc
acacagggcacagatgggctggtggacgatgtggccagtcgagtcgtcgcatacatccag
agttcaggtggcggatacgacaggactcctggcccccctggtcctccgggtccacccggc
gccatctctgtcaatgacataatcaacattttacaacgagaagatgtgaggaggtatgtt
gcgggtcctcccggtccgccgggaccccctggagatcttggtcttggaagccccagcttt
aacacgcaggaggtggctgaacgggtgctcagctttctggccgacaagggggtagtaggt
gtccctggaccccagggaccccctgggcctcctggtcatcctggaagcttatcaaccggg
tatcaagcggttgttggccctcaggggcctcctggtcctccaggtgtccctggtctacaa
ggccctgcaggaccacctggcccaccaggattggggaactacatcagctcagacatccat
gactacctgcagagcgtcaccttcagaggctctccggggccccctggtccccctggacct
gagggcccccctggtaaaatgcggggactggtttcctatgctgagcaggccaacagagag
tcgatcacagcagagcgacaaggtttcgatggtggtgctgttagaggagctatgttagga
catcctggtctgccaggccctcccggacccccgggacacaagggagagccaggtgcgtct
ggagccggagccggagcctggaacctggattctgccgactactccactatggctgtcaga
gtaactgactacatcaaatcccatggtctgctccgtgatgttttgagagattctgaacga
gttgtccaaggaccccctggacctcctggacttccaggaatacctggacaaagccagtgg
gttagctcccgggaaaatgtcgtggatgtagtggaatatctcaaatctcgcggtgtgctg
cacgacatcgtgagggagcacaacagtcgcatcttccagggccctcaaggaccgcccggc
cccccaggtcccccaggatacagccggccgtttggttcctatggaaatgccacggccctg
ctggaatatatcaaaacgcacggcctgcttcatgacaccaaggggagtcacggtgaacgt
gtggtccaaggaccacctggaccggctggtcctcccggtcccccgggatacagccgagtg
tttggttcccacgcgaatgtcacggatctggtggagtacatcaaaactcatggagccatt
gtaggacaacctgggagaccagggcagaaaggagacgtgggttacccaggcctaaatgga
gagagaggtgaacgcgggctccgtggacctcagggacccaaaggacaaaagggagaccga
ggagaagtccccatgatgactaagaggcggaggaggagggatgttggcgtctga
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integrated database retrieval system
