Scophthalmus maximus (turbot): 118313338
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Entry
118313338 CDS
T09850
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
118313338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smau04131
]
118313338
Membrane trafficking [BR:
smau04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
118313338
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
118313338
RAVE complex
118313338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WDR55
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_HPS5
Beta-prop_EML
NBCH_WD40
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Beta-prop_DCAF4
Beta-prop_CAF1B_HIR1
Beta-prop_Vps41
Beta-prop_WDR19_2nd
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
118313338
NCBI-ProteinID:
XP_035494584
LinkDB
All DBs
Position
19:8445507..8490229
Genome browser
AA seq
3086 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSVNNVPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDCSVQGGQIAASYGSIVCVFEPVQNPDLKDPSLTKLNCQWQKTGQFVLHSMVRNLAW
HPTGSTLLTGSSCLQLWSHVDGVKYEAEERGKQSEMTMRDSHCAWRCIWQSKTASPVSLM
KFSPDGDFFATAGQDDCLVKVWYSTSKWKLGVSRLFTPPEPSVSIQGELAFSFVYLAHPR
SVTGFSWRKTSTYMPRGAVCNVLLTCCKDSVCRLWAETLLPGDSLLSGFHNNHASGQHSG
TPNSSGPTRKHTCNGKTQGNAVAELNFQESWHSSYQDVPQPSLTGCLSHHQSRHFNHRKS
SGNIPHANALCHFHIAASINPATDIPLLPSISSLSAADDEEPGGPFTVHWLNNKELHFTL
AMEVFLQQVRGNLEQQNECSHEEPEDEDNFEEEDNGSRPKDPQRPEGTGLPLAAVEHQVD
VLLEEWNKGADMLFSIHPMDGSLLVWNVDWLDEYQPGMFRQAQVSFVSRIPVAFPAGDAI
SLSHSVVMYACNKNVDLAIQHGRQRPPGSSLPQTKSALISYRDQGKATASNSLRLSIFTP
NVLMISKHADGSLNQWAVSFAEDSSFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTT
SHHNALRTPDVDSILAPPEVSTSVPRGSRASRVSLGVVSQDPNAIYSELILWRVDPVGPL
SLSGGVSELARINSLHASAFANVAWLPTLIPSSCLGVYCNSPSACFVASDGHSLRLYQAV
IEAKKLLSELSNPEISKYVGEVFNMISQQSTAKPGCIIELDAITDFQGKETQLLHVFEED
LILGSERTESTQDTADSPWAASGEPTFSARFFLVVVELTPTGRSLLHMWHLHLAARPITT
EETKTDKDATRASPMNSSQFDFDTFTSPVTQKTRTCTSSLQSACRLSLETHRLYSQEMAL
PEGVEAISVTPSAGHLSASCSLPAGRVPYLLATSCSDGKVRFWRCNVVATGSSSTDTLLY
QWEEWPLLVEERFPSSSSVSVPGRPVEVSCCHTGRIAVAYRQTPNTPLNSATHLDSHGLL
TSPPTLASSPYNTNLTPTRTVQRNTNLSPSPNLANISEPLVHIDIFQCESTGGSQWIPEQ
TIVLDGTDPTSNSGTTLPNENCLGSTSKSLVHLDWVSQEDGSHVLTVGIGTKIYMYGRLS
GKPPELGLSSDATREQSLSRLVLLRSVDLVSSVEGSLPIPVSLSWVRDGILVVGMDCEMH
VYSQWQPPTPPRPSAVIAQDTDISSSVSSIISAVRQSQEEGLSAGAPASLLAPPKKTLTR
SMMSLAQKLSGKRTAYDLPVELEDSGLFEAAHQLFPTLPQYHPVQLLELMDLGKVHRAKA
ILSHLVKCIAGEIVPLKDSTTIPERRVRSRTIGAGGSTARDPKIFDIAENSTPDYTEISS
IPPLPLYALLAADEDTSPNPDTVGSVSGDSRHGSTHTDAYDELFHTSSIVDLDPLDNNQE
ETGNKVIDLSQYSPTYFGAEHAQVLSSHLLHSSLPGLTRMEQMSLMALADTIATTSTDLK
GSQGKSKGGETLDECGLKFLLAVRLHTFLSTSLPPAHRAQLLRQGLSTCHYAWAFHSEAE
EELLNMLPALQKGEPNWPELRSMGVGWWLRSTNKLRRCIEKVAKVSFQRSNDPLDAAIFY
LALKKKAVVWGLYRSQKNAKMTDFFRNNFSEDRWRKAALKNAFSLLGKQRFQHAAAFFLL
AGSLKDAVEVCLEKMQDLQLALVISRLYESEFETASTYKKILQRHVLGQDRQISAHPDPF
LRSMAHWVLEDYSGALDTLLEQPTNSNSSRSTESKCDTGSSSVSTCNPEVFNFYTYLRTH
PLLLRRHFGSSDKAKVGLTAEGRRADSVSLDERRLFFTAAYAHLQAGCPMLALVILSKMP
KVHKHSKVPNQEDTGISGELSAGSKDGQASDWSQPSLNGYESDGNSLSVSKSDSVLSFDW
SQPSVTLPDEHLELKWDSDKDEEEEDEDEEEIKNPKTGRIADSSSVFQDTQDVMSPLMGE
DSEDSNDFIAPSDDILVAQLKFTACLKIMTNELRTLSTGYEVDGGKLRYQLYQWLEREVV
ALQRCCSYKPCLPELSVLGDASVSGSAEEEEQPGSPRGDSQRSRRHWLQSNQPLLRMFLS
YCSLHGSHGGGLASVRMELILLLQESHQDNSTQSVVTSSSQPTLIPLLMACTANVKTVVA
NPIVYLTNLTHDILQTINALDSPPHPDVINNEIYVMHTLAASLSACIYQCLCDGHTYSHM
NHFTGIVYQSVLLSQKQPARAVSVDESVQPNTSPAQWPGIASLIRLLSSAGEESQPGLAV
LLCEILTAVFLSLFVHGMATHSSNELFRIMAHPLNSQLWVTVFGGGARTPVIEKPNSPTR
TPPLASPSGSDRKSRRFRLLSSRRGSKEESGIEREGPSSPKHVPVVEQEAASIFKERFVP
PELSIWDYFIAKPFLPPSENRIEYDSEESQGSQDEDEDEYEYEDVFDPNSPRREHSNHNS
YSWCLMRLAMVQLVLVNLKSFYPMAGYDLLDLPVGSPLCHAVLKTLQRWEQVLQKRLEIF
GGPPSKYISTHSQDETAAPGPALLRHKALFEPSNTPFRTNHHSALPVKRLWQFLVKQEEV
QETFIRNIFTKIRDPNESVEDQTDNMKCSGMEETGNNQTGSDLGSPGGKARIIHKESDII
TAFAINKANRNCLVMASTHDIQELDVSSILATQIMTWIDDDEAEAKGAAGDDFLVIHARD
DFAALHGTTPYTHSSPGTPINMPWLGGVQTGRGAAMMIKRNINNVRRMTSHPTLPYYLTG
AQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGGLSLWQTNTSGNA
PKPFLTLHCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVTPANSLVHAFCCHES
GATVLAMAPRQQLLITGGRKGWISVLELPHKHQRQSFQAHDSPVKALAVDVIEDCFISGS
AEGNIKVWSLATQCVLFAFPNEHARQSLFRNLGTGVMQIEVGPTNHIFSCGADGTMKMRV
LPNRFSVGGNNNNNHGNLKNDVKYII
NT seq
9261 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaggtcctcacaggggccgtcaaccctggggacaattgtttctctgta
ggaagcgtcaacaatgtgccattcacggcctatgcgtcaggttgcgatgtagtcatcttg
ggcagtgactttgagcgactgcagatcatcccaggagccaaacacggcaacattcaggtc
ggctgtgtcgactgctcagtgcagggtggacagattgcagcttcctatggaagcattgtg
tgcgtctttgagcctgttcagaacccagatctaaaagatccatctttgactaagttgaac
tgtcaatggcagaagactggtcagtttgtattacattctatggtacggaacctagcctgg
caccccacaggcagcactctcttgacaggctctagttgcctccagttgtggtctcatgtt
gatggagtaaaatatgaagctgaagaaaggggaaagcagtcagaaatgaccatgagagac
tctcattgtgcctggagatgcatctggcagagcaagacagcctccccagtcagtttaatg
aagttctcacctgatggggatttctttgctactgctggacaggatgattgcctagtaaag
gtctggtacagcaccagtaagtggaagttaggtgtttccagactcttcactcctccagaa
cccagtgtcagtatccagggagagctggccttctcctttgtctacctggcccatccccgt
tccgttacgggtttctcttggaggaagaccagcacgtacatgccacgaggtgcagtgtgt
aatgttctgctcacctgctgtaaggacagcgtgtgtcggctctgggctgagacgctgttg
ccgggggacagcctcctgtcgggtttccacaacaaccatgcttctggccagcacagtggc
acacccaactcttctggtcctactagaaaacatacctgcaacgggaaaacacaaggaaat
gcagtagcggaattgaattttcaagaatcatggcactcgtcctaccaggatgtgccccag
ccctccctgactgggtgcctgtcccaccaccagagccgacacttcaaccacaggaagagc
agcggcaacataccccacgccaatgctctctgccacttccacattgctgccagcatcaac
ccagccacagacattcctctgctgccctcaatctcgtctctgagtgcagcggacgacgag
gaacctggaggtcctttcaccgtccactggctcaacaacaaggagcttcatttcacttta
gctatggaagtcttcctgcagcaggtccgaggcaacctggagcaacaaaacgaatgctcc
catgaagagcctgaagatgaggataactttgaggaagaggataatggtagcagaccaaag
gacccccaaagacctgagggcacggggcttcctctggcagcagtggagcaccaggtggac
gtgctgttagaggagtggaataaaggggcagacatgttgttcagtattcaccccatggac
ggctctctgttagtctggaatgtggactggttagacgaataccagccaggaatgttcaga
caagctcaggtgtcgtttgtgtctcgtatccccgtggcattccctgcaggcgacgcaatc
tccctgagccacagcgttgttatgtacgcctgcaacaagaacgtggatctggctatccaa
catggccgacaacggccgcctgggagctcattgccacaaactaaatctgctttaataagc
tacagggaccaaggaaaagctacggccagcaatagtcttcgactaagcattttcacccca
aacgtcctaatgatctccaaacatgccgatggttccctgaaccagtgggcagtcagtttc
gcagaggactcttctttctccactgtgctcagtgtttctcacaagtcacggtactgtggc
caccgcttccacctcaatgacctggcctgtcactcattactccctctcctcctcaccacc
tcacaccacaatgccttgaggacgccggatgtagacagcattctggctcctccagaggtt
tcaacatctgtgccccgtgggtcaagggccagccgggtgtccttaggtgtggtttctcag
gatcctaatgcaatctacagtgagctgattttgtggagagtggatcccgttggcccgctg
tctttgtcaggcggggtctccgagctcgcaaggatcaattctctccatgcatcagcattt
gctaatgtagcctggttgcccaccctcattcccagcagctgtttaggtgtgtactgtaac
tcccccagcgcctgcttcgtggcaagtgacggccactcactccggctgtatcaggccgtt
atagaagctaagaaactcctgagtgagctctccaaccctgagatatcaaaatatgttggg
gaggtgttcaacatgatcagtcagcaatccacagcaaaaccaggatgtattatagaactg
gatgccattactgactttcaagggaaggagacccagctcctgcatgtttttgaagaggat
ctgatccttggcagtgaaagaacagagagcacacaggacactgctgattctccttgggct
gcctcaggggagccgaccttctcggcacgttttttcctggtggtggttgaattaacccca
acaggtcgctcactcctccacatgtggcatctccatctcgctgctcggcccatcaccacg
gaggagaccaagacagacaaggatgccaccagagcgtctcctatgaacagctctcagttt
gactttgacacattcacatctccagtaactcagaagacacgaacctgcacttccagtctt
cagagtgcttgtcgcctcagcctcgaaacacacagactatacagccaagagatggctctt
ccagaaggggtggaagccatcagtgttacaccctcagcaggtcacctgagtgcttcatgt
tctctaccagctggccgtgtgccttatctccttgctacttcctgttctgatggaaaagtg
cgcttctggaggtgtaacgttgtggcgacagggtcctccagtacggacactttgttgtac
cagtgggaggagtggccactcctggtggaggagaggtttcccagcagcagctccgtaagc
gtaccaggtcgccccgtagaggtcagctgctgtcacaccggacggattgcggttgcttac
agacagacgccaaatacacctctgaactcagcaactcatctggactctcatggactgttg
acttctcctcccaccctggcatcctccccctataacaccaacctgaccccaacccggact
gtacagcgcaacacaaatctttctccaagccccaacctggcgaacatcagcgaacccctg
gtccacattgacattttccagtgtgagtccactggcggttcacagtggattccagagcag
accatagtcctggacggcacagatcccacttctaattctggtactactttacctaatgag
aactgtcttggttccactagtaagagcctcgttcatttggactgggtgtcccaggaagat
gggtcacatgttctgacagtcggcattggaacaaaaatctatatgtacggccgtctctca
gggaagcctccagaactgggcctgtcgtccgatgccactagagaacagagcttgtctcgc
ctagttctgcttcgatcagttgatctggtctcctctgttgaaggctcgttaccaatcccg
gtctccctctcctgggtacgagatggcatcttggtagtagggatggactgtgagatgcac
gtctactcccagtggcagcccccaacaccacccagacccagtgctgtcattgcccaagac
actgacatcagcagcagtgtctcctccataatctcagctgtcagacagagccaggaggag
ggactcagtgctggggctccagcgtctttgctagcccctcccaaaaagactttgacaagg
tcgatgatgagtcttgcacagaaactcagcgggaagagaacggcttatgacctgcctgtg
gagctggaagattctgggctttttgaagcagctcaccagctctttcccactcttccccaa
taccatcctgtacagttactggagctcatggatctcgggaaggttcaccgtgccaaagcc
atcctttctcacctcgtaaaatgcatcgctggagaaattgtgccactcaaagacagtacc
accatcccagagagacgagtgcgctctcgaaccatcggcgctggaggcagcacagcgagg
gatccgaagatatttgacatagcagagaactccacccctgactacacagagataagctcc
atccctcccctgccactgtatgccctcctggcagctgatgaggatacatcaccaaatcct
gatacagtaggcagtgtgagtggagatagtcggcatggatccactcacacagatgcttat
gacgagctctttcatacatccagcatagtggatctggatcctctggacaacaatcaagag
gaaacgggaaacaaggttattgacctgtcccagtacagtcccacatactttggtgcagaa
cacgcccaggtgctgtccagccatctccttcactccagtttgccaggattaactcgcatg
gagcagatgtctctcatggcattggccgacaccatcgccaccacaagcacagacctcaag
ggcagccagggcaaaagcaaaggtggagagacactggatgagtgtggtctgaagttcttg
ctggccgtcagattgcataccttcctctctacctccctgcctccagcacatcgagcgcag
ctgctacggcaaggcctgtcaacgtgtcattatgcctgggccttccactctgaagctgag
gaggagctgttgaacatgctccctgccctacagaagggagagcccaactggcctgaactg
cgctccatgggtgtaggctggtggctgcgcagcaccaacaagctacgcaggtgcattgag
aaggttgccaaggtttcttttcagagaagcaatgacccactagatgcagctatattttac
ctcgcactaaaaaagaaagcagtggtctggggattgtacaggtctcagaagaatgccaaa
atgactgacttcttccgcaacaacttcagtgaggaccggtggagaaaagcagcattgaaa
aatgccttttcactgttgggaaagcagcggttccagcatgccgcagcattcttccttcta
gccggctccctcaaggatgctgttgaggtttgtttggagaaaatgcaggacctacagctg
gctcttgtaatctccagattgtacgagtctgagtttgaaacagcgtccacctataaaaag
atcctccagagacatgttctgggtcaagatagacagatttcagcccatccagacccgttc
ctgcggagcatggctcactgggtcctagaggactacagcggagccttggacactttactc
gagcaacctaccaacagcaacagctctaggtccactgagagcaaatgtgacactggttcc
tcctctgtgtcgacgtgcaaccctgaggttttcaacttttacacctacctccggacccac
ccacttctccttcgccgccattttggttcttcagacaaggctaaagttggccttactgct
gagggtcgcagggctgactccgttagcctggatgagagaagactgtttttcacagctgca
tatgcacacctacaagctggctgccccatgcttgcacttgtaatcctctccaagatgccc
aaagtccacaaacattccaaagtcccgaatcaggaggatacaggaatctctggtgaactc
agtgctggcagtaaggacggacaagcctcagattggtctcaaccgtccctgaatggctac
gagtcagacgggaacagcttatccgtcagtaaatcagactcagtgttaagttttgactgg
agccagccctctgtgacactcccagatgagcacctggagctaaagtgggacagtgacaag
gacgaggaagaagaggatgaggacgaagaagaaattaaaaatcccaagactggtagaatt
gcagacagcagcagtgtgttccaggacacacaggatgtcatgtcaccgctaatgggagag
gacagtgaggacagcaatgacttcatcgcaccgtctgatgacatcttggtcgcccagcta
aagtttactgcctgcttgaagataatgaccaatgagctccgaactctgtcgacagggtat
gaagtcgatggggggaagctacgttaccagctctaccagtggttagaaagagaggtggtg
gctctccagcgttgctgcagctacaagccctgcctgccagagctgtctgtcctgggtgat
gcctctgtgtctgggtcggcggaggaggaggaacagcctggaagccctcgtggtgacagc
cagaggagcaggagacactggctgcagagtaaccagcccttgctgcggatgtttcttagc
tactgcagcttgcatggctcccacggtggaggactggcttctgtacgcatggagctcata
ttgctgcttcaggagtctcaccaggacaactccacccagtcagtggtgacatcaagttcc
caaccaaccttgatccctcttctaatggcttgcacagccaatgtgaagacagtggtggcc
aatcccatcgtctacctgaccaacctgacccacgacatcttgcagaccatcaatgcactt
gactctcctccccatcctgatgtcattaacaatgagatctatgtgatgcacaccttggct
gcttctttgtcggcctgtatatatcagtgtctgtgtgatggacacacctacagccatatg
aaccatttcaccgggattgtttaccagagtgtgttgctgtctcagaagcagccagccagg
gctgtcagcgtggatgagtctgttcagcccaacacgtctcctgcacagtggccaggtatc
gcatctctgatccgtctgctgagctcagcaggtgaggagagccagccaggcttggcggtg
ctgctctgcgagatcttgaccgccgtattcctcagtctgtttgttcacggcatggccacc
cactccagcaacgagctgtttcgcatcatggcccaccctctcaatagccagctttgggtg
acggtgtttggaggaggtgcccggacccctgtcatagaaaaacccaacagcccgacgaga
acacccccactagcctctccgagtggctcagacagaaagtccagacgattcaggcttctg
tcatcccgccgtggatccaaagaggagtctgggatagagcgcgagggaccctccagtccc
aagcatgtccctgtagtggaacaagaagctgcctccatctttaaagaacgatttgtccct
ccagagctcagcatttgggattactttattgccaagcctttcctgcctccatcagaaaac
agaattgagtacgactccgaggagagccagggcagtcaagatgaagacgaagatgaatat
gaatatgaagacgtattcgaccccaactctccacggcgagagcattcaaaccacaattca
tatagttggtgtttgatgcgtctggcaatggttcagctggtgttggtcaacctcaagtca
ttttacccaatggcaggatatgatctattagatctgcctgtgggctctccactgtgtcac
gctgtgctaaagactttgcagcgctgggagcaggtgttgcagaaaagactggagatcttt
ggggggccgccatccaagtatatctccacacactcacaggatgaaacggccgcacctggc
cccgccctgctcagacacaaggccctgttcgaaccgtccaacaccccattcaggactaac
caccactcagcgctcccagtgaaacgtctgtggcagtttctggtcaagcaggaagaagtg
caggagactttcattagaaatatcttcaccaagattcgggacccaaacgagtcggttgag
gaccagactgacaatatgaaatgttcagggatggaggagacaggaaacaatcagactggg
tcagatctgggctcccctggtggaaaggcacgcatcatccacaaggaatctgacatcatc
acagcctttgccatcaacaaggcaaatcgaaattgtctagtcatggcctccacccatgac
attcaggagctggatgtgtcatccatcttggccacacagatcatgacatggatagacgat
gatgaggccgaagccaaaggtgccgctggtgatgacttcctggtgatccatgcacgcgat
gactttgccgccctccacggcaccacgccgtacacccacagtagccctggtacacccatc
aacatgccgtggctgggaggtgtgcagacaggcaggggcgcagccatgatgatcaagaga
aatatcaataatgtgagaagaatgacctcgcatcccacactgccgtactacctgacggga
gctcaggacggtagcgtgaggatgttcgagtggggccactcccagcagatcatctgcttc
agaagtccgggcaactcccgagtcaccaggatacgattcaaccaccagggaaacaagttc
ggtatcgtagatgctgatgggggattgagtctctggcagaccaacacgagtggcaatgca
cccaaaccattcctgacgttgcactgccacaacaagacggctcacgactttgtcttcgtg
ggctcctcctccctcatcgccaccgcaggactctcaacagacaacaggaacgtgtgtttg
tgggacactctggtgacgcctgcaaacagccttgtacacgctttctgctgccacgagtcg
ggtgctaccgtgctggcgatggccccgaggcagcagctgctcatcacgggcggcaggaag
ggctggatcagtgtcctggagctgccccacaagcaccagcgccagagcttccaggcccac
gactcgccggtcaaagcgctggccgtcgacgtgatcgaggactgtttcatcagcgggtcg
gccgagggcaacatcaaggtctggagcctggccacgcagtgtgtcctcttcgccttcccc
aacgagcacgcccgccagtcgctgttcaggaacctcggcacgggcgtcatgcagatcgag
gtggggccgaccaatcacattttttcctgcggcgccgacgggaccatgaagatgagggtc
ctccccaaccgcttcagtgtcggcggcaacaacaacaacaaccatggcaacctcaagaac
gacgtgaaatacatcatataa
DBGET
integrated database retrieval system
