Scophthalmus maximus (turbot): 118313355
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Entry
118313355 CDS
T09850
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118313355 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118313355 (smarca2)
03036 Chromosome and associated proteins [BR:
smau03036
]
118313355 (smarca2)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118313355 (smarca2)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
118313355 (smarca2)
Chromatin remodeling factors
BAF complex
118313355 (smarca2)
PBAF complex
118313355 (smarca2)
GBAF(ncBAF) complex
118313355 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
118313355
NCBI-ProteinID:
XP_035494624
LinkDB
All DBs
Position
19:complement(3685361..3727973)
Genome browser
AA seq
1603 aa
AA seq
DB search
MSTPSDTPGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNAPHGM
QGQGQGEYSQDGMYPMHKPMEGMSDKTMADAMHFGHMKGVGMRSLHSGMGPPQSPMDQHS
QGYMSPHPSPMGVHEHASSPMSGGGGGGPTPPHMPPTQSGPMMPMDPQVGMANMSSMSQP
GRGPSAFSPVQLQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQPPQQQQQQQ
QQQQPQQPAPSASPYNRPPGMAMAPLGGPQSSPCPTPAMQGHNQSTAPKPWSDGQGGENQ
ASAQKHLTPASSGRPSPAPPQATAVPPGPLPGGSVAPQPPGQQVSPMLQMQQKQNRVTPI
QKPQGLDPVGILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQ
LRQDVVACMRRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQEY
LNSILQHAKDFKEYHRSVSGKTQKLTRAVANWHTNTEREQKKETERIEKERMRRLMAEDE
EGYRKLIDQKKDKRLAYLLQQTDEYVANLTTLVYEHKAAQAAKEKKKKKKKKKKVDGDGE
GTSAIGPDGEPMDESSQMSELPVKVIQTETGKVLQGTEAPKSSQLEAWLEMNPGYEVAPR
SDSEESSSEFEEEEDDEAAKAEQEETKIIDPNGNKVSVKAAQHIIESVKQDVDDEYSVPT
GETSETHSYYGVAHAVIERVEKQSSLLINGMLKHYQVQGLEWMVSLYNNNLNGILADEMG
LGKTIQTIALITYLMEMKRLNGPYLIIVPLSTLSNWVYELDKWAPSVVKISYKGTPGLRR
GLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV
APRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI
LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQKGILLTDGSE
KDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGYPNGIISGPDLYRASGKFE
LLDRILPKLHATGHRVLLFCQMTTLMTIMEDYFGYRNFLYLRLDGTTKSEDRAALLKKFN
EEGSQFFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR
LCSVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGHERRVFLQAILEHEEQNEEEDEV
PDDETLNQMIARNEDEFELFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDDEVER
LTYEEEKEKLFGRGSRCRRDVDYSDTLTEKQWLRAIEDGNLEEMEEEIRLKKRKRKRRQD
KDSSSRDDGGGGGSSSKGKKRRGRPPAEKLSPNTPKLTKQMNTIIDTVINYRDGAGRQLS
EVFVQLPSRKELPEYYELIRKPVDFKKIKERVRSHKYRNMGDLEKDVMLLCHNAQTFNLE
GSQIYEDSIVLQSVFKSARQKIAKDEESDDDSEDDDEDDDEDESEAEAKSVRVKIKLSKE
GRSHDKGKKRQSRGKAKPVVSDDDSDEDQDDNDQSDRSKSDDE
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccctcagacacgccaggtggtatgtcccatcctggcccttccccgggcgcg
ggtctctccccggggcccatcttgggccccagccctggaccggacccttcaccgggctct
gtccacagcatgatgggacccagtcccggacctggaacacccaatgcacctcacggcatg
cagggccaaggccagggcgaatactctcaggacggcatgtatcctatgcacaagcccatg
gaggggatgagtgacaagacgatggcagacgcaatgcactttggtcatatgaagggtgtg
gggatgagatctctgcacagcgggatggggcctccacagagtcccatggaccagcacagc
caaggatacatgtcgccccatccgtcccccatgggtgtccacgagcatgcttccagcccc
atgtctggaggcggaggtgggggacccacgccgccccacatgcctcccacacagtcgggc
cccatgatgcccatggatccccaggtgggcatggccaacatgtcgagcatgagccaaccg
gggcgaggaccctctgctttcagccccgtccagctgcagcagctcagagcgcagatcctg
gcctacaagatcctgggccgggggcaaccgctgcccgaaaacctccagctggctgtgcag
ggcaagaggagcctacccacaatgcaacagcagccgccgcagcaacaacaacagcaacaa
cagcaacaacagccacagcagcctgcacccagtgctagtccttacaacaggcctccaggg
atggcaatggcacctttaggtggaccccagtcaagtccctgcccgaccccagctatgcaa
ggacacaatcaaagcacagcacccaagccttggtccgatggtcagggcggtgaaaatcaa
gccagcgctcagaaacacctcacccctgcctccagtggacgcccgtctcccgcacccccg
caggccacagctgtaccgccggggcccttgccgggcggctcggtggccccacagcctcct
ggacaacaggtgtcccccatgctgcagatgcagcagaagcagaaccgggtcacgccgatc
cagaagccccaaggcttggacccagtgggaatccttcaggagcgagagtacagattgcag
gctcggatcgctcatcgtatccaggagctggagagtctgccgggctccctgccccccgac
ctgaggactaaagccacggtggagctcaaagcgctgcgtctgctcaacttccagcggcag
ctgaggcaggacgtggtggcgtgcatgcggcgggacacgaccctggagaccgccctcaac
tcaaaggcctaccgacgcagcaagcggcagacgctgagggaggcgcgcatgaccgagaag
ctggagaagcagcagaagctggagcaggaaaagaagcgcaggcagaaacatcaggaatat
ctcaacagcatccttcagcatgcaaaggacttcaaagagtaccaccgctcggtgtccggt
aagacccagaagctcaccagagccgtcgccaactggcacaccaacacggagcgggagcag
aagaaggagacggagagaatcgagaaggagaggatgaggaggctgatggcggaagacgag
gaaggctacagaaagctcatcgaccagaagaaggacaagcgcctggcctacttgctgcag
cagacggacgaatacgtggccaacctcaccacgctcgtgtacgagcacaaagcagcccag
gctgccaaggagaagaagaagaagaagaagaaaaagaagaaggtggacggagacggcgaa
ggcaccagcgccattggacctgacggagagcctatggacgagagcagccagatgagtgag
ctgccagtcaaagtgattcagacggagaccgggaaagttctgcaggggacggaagctccc
aaatccagccagctggaggcctggctcgagatgaaccctgggtacgaagtagccccgcgg
tcagacagcgaggagagcagctccgagtttgaggaggaggaggacgacgaggcggccaag
gctgagcaagaggagacgaagataatcgatcccaatggaaacaaagtgtctgtgaaggct
gcgcagcacatcatcgagtctgtcaagcaggacgtggacgatgaatacagcgttcccact
ggagagaccagtgaaacccactcttactacggcgtggcccacgccgtcatcgagagagtg
gagaagcagtcgtccctgctgattaacggcatgctcaaacattaccaggtccaggggctg
gagtggatggtctccctgtacaacaacaatctcaacggcatcctggctgacgagatgggc
ctcggcaaaaccatccagaccatcgccctcatcacctacctgatggagatgaagaggctc
aacgggccctatctcatcattgtccctctctcgaccttgtccaactgggtctatgaactt
gacaagtgggcaccgtctgttgtgaagatttcttacaagggcacccctggtttgcgccgt
gggctcgtaccgcagctccgcagcgggaagttcaatgtcctgctgaccacctacgagtac
atcattaaggacaagcacatactggccaagattcgctggaagtacatgatcgtggacgag
ggtcaccgcatgaagaaccaccactgcaagttgacccaggtgctgaacacccactacgtg
gccccgcgacgtctcctgctcaccggcacgccgctgcagaacaaactccccgagctgtgg
gctctgctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgagcagtgg
ttcaacgcaccgttcgccatgacaggagagagggttgacctaaacgaggaggagaccatc
ctgatcattcggcgtctgcacaaggtgctccgccccttcctgctgcgcagactgaagaag
gaggtggagtcgcagctgccagagaaggtggagtatgtcatcaaatgtgacatgtctgcc
atacagaaggttttgtatcgccacatgcagaagggcatcctcctcaccgacggctcggag
aaagacaagaagggcaaaggaggcgcgaagaccctgatgaacaccatcatgcagctgaag
aagatctgcaaccacccgtacatgttccagcacattgaggaatcttttgctgagcacttg
ggatatccaaacggcataatcagcgggcccgatctgtatcgagcttcagggaagtttgag
ctcttggatcgtatcctgccgaagctccacgccaccggccacagagtcctgctcttctgc
cagatgaccactctcatgacgatcatggaggactacttcggctaccgcaactttctatac
ttgcgtctcgacggaaccaccaagtcggaggaccgagcggcactgctgaagaaatttaat
gaggaaggatctcagttcttcatcttcctgctcagtacacgagccggtggcctcggcctg
aacctgcaggctgctgacaccgtcgtcatcttcgacagtgactggaacccccaccaggac
ctccaggctcaggaccgcgcccaccgcatcgggcagcagaacgaagtgcgcgtgctgcgc
ctgtgctccgtcaacagcgtggaggagaagatcctggcggctgccaagtacaagctgaac
gtggaccagaaggtgatacaggcgggcatgttcgaccagaagtcctcgggccacgagcgc
cgcgtcttcctccaggccatcttagagcacgaggagcagaacgaggaggaagacgaggtg
cctgacgatgaaaccctcaaccagatgatagcacgcaatgaagatgaatttgagctcttt
atgcgcatggacatggacaggcggcgggaggacgccagaaacccgaagcgcaagccccgc
ctgatggaggaggacgagctgccgtcgtggatcatcaaagacgacgacgaggtggagcgg
ctcacgtacgaggaggagaaggagaagctgttcggccgagggtcgcgctgccgccgggac
gtggactacagcgacacactgacagagaagcagtggctccgggccatcgaggacggaaac
ctggaggagatggaggaggagatccgcctgaaaaagcgcaaacgcaagcggcgacaagac
aaggactcgtcgagcagagacgacggaggcggcggcggcagcagcagcaagggcaagaag
cgacgcggacgtccgccggccgagaagctctcgcccaacacccctaagctcaccaagcaa
atgaacaccatcatcgacacggtgatcaactacagagacggggcaggaagacaactgagc
gaggtctttgtccagcttccgtccaggaaggagctcccggaatattacgagctgatcagg
aaacctgtcgacttcaaaaagatcaaggaacgtgtgagaagtcataaatacaggaacatg
ggagacctggagaaggatgtgatgctgctctgtcacaatgcccagaccttcaacctggag
ggatcccagatatacgaagactccatcgtccttcagtccgttttcaaaagtgccaggcag
aagattgccaaggacgaagagagcgacgacgacagcgaggatgacgacgaggacgacgac
gaggatgagtcggaggccgaggccaagtcggtgcgagtcaagatcaagctgagcaaggag
gggcggagccacgacaaaggcaagaagaggcagagccgagggaaggccaagccggtggtc
agcgacgacgacagcgacgaggaccaggacgataatgatcagtcggacaggagcaagagc
gatgacgagtga
DBGET
integrated database retrieval system
