Scophthalmus maximus (turbot): 118313618
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Entry
118313618 CDS
T09850
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118313618 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118313618 (lsm1)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118313618 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
118313618 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
118313618
NCBI-ProteinID:
XP_035495078
LinkDB
All DBs
Position
19:18153705..18158100
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AA seq
133 aa
AA seq
DB search
MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDVDKPCDTVLQQVSIEEILEEQRLQQQAKQETEKVKMQVLKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgtaccgggcacggccagcctcattgacgacatcgacaagaagcacctggtg
ctgctccgagatggcagaacgctgatcgggtacctcagaagcattgatcagtttgccaat
ttggtttttcatcagacagtcgagcgcatccacgtggggaagaaatttggtgacatcccc
agaggaatattcatagtgaggggagagaatgtggtcctgctgggagagatagacgtggac
aagccctgcgacacggtcctgcagcaagtttccatcgaagagattctggaggagcaacgg
ttgcagcagcaagccaaacaggagacggagaaagtcaaaatgcaggtcctgaaggaccga
ggcctttccatccccaaagctgataacttggacgaatactag
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