Scophthalmus maximus (turbot): 118313977
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Entry
118313977 CDS
T09850
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03030
DNA replication
smau03410
Base excision repair
smau03420
Nucleotide excision repair
smau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118313977 (rfc5)
03410 Base excision repair
118313977 (rfc5)
03420 Nucleotide excision repair
118313977 (rfc5)
03430 Mismatch repair
118313977 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smau03032
]
118313977 (rfc5)
03036 Chromosome and associated proteins [BR:
smau03036
]
118313977 (rfc5)
03400 DNA repair and recombination proteins [BR:
smau03400
]
118313977 (rfc5)
DNA replication proteins [BR:
smau03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118313977 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
118313977 (rfc5)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
118313977 (rfc5)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118313977 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
118313977 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_24
RuvB_N
AAA_14
AAA_16
AAA_assoc_2
DEAD
DUF815
ResIII
AAA_7
AAA_5
PhoH
AAA_30
ATPase_2
DNAX_ATPase_lid
AAA_19
TIP49
AAA_2
AAA_25
Thioredoxin_6
bpMoxR
Glyco_hydro_57
Motif
Other DBs
NCBI-GeneID:
118313977
NCBI-ProteinID:
XP_035495889
LinkDB
All DBs
Position
19:complement(4656775..4662232)
Genome browser
AA seq
335 aa
AA seq
DB search
MASTNKAAGQSRNLPWVEKYRPQRLDDLISHKDILTTIQRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYGDKEFNSMVLELNASDDRGIDVVRGPVLSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVIQQESIDVSPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDAVYTCTGHPLRSD
IANILDWSLNKDFTAAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPDIRIGLLIKLA
DIEHRLASGTDEKIQLSSMVAAFQAVRDLVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacgaataaagcagcaggacagagcaggaatctaccgtgggttgaaaaatac
agaccacagagactcgatgatctgatctcgcacaaagatattttaaccaccatccagagg
tttatcagcgaggacaagctccctcacctcttgttctacggaccccccggaacgggcaag
acctccaccatcctcgcctgcgcccgccagctctacggggacaaagagttcaactccatg
gtgttggagctgaacgcatcagacgacagaggtatcgatgtcgtgcgaggacccgttctg
agttttgccagcacgcgaaccatcttcaagaagggcttcaagttggtgatactggacgag
gccgatgccatgacccaggacgcccagaatgcattgcggcgagtgatcgagaagttcaca
gaaaacacccgcttctgtctgatctgcaactacctgtccaagatcatcccggccctccag
tcccgctgcaccaggttccgcttcggcccgctgtccccggaccagatgatcccccggctg
gagcatgtgatccagcaggagagtattgacgtatctccagatggaatgaaggccattgtg
accttatcatcaggtgacatgaggagatctctcaacatcctgcagagcaccagcatggcg
tatgggaaggtgacggaggacgcggtctacacctgcacgggtcaccccctccgctcggac
atcgccaacatcctcgactggtccctcaacaaagacttcactgcggcgtacaaccaaatc
cttcagctgaagactctgaaaggtttggccctgcatgacattctcaccgaggtccacttg
ctcatacacagagtggactttcctccagacattcggatcggtctgctcatcaagctagcc
gacattgaacatcgactcgcctccgggaccgacgagaagatccagcttagctccatggtt
gcggccttccaggcagtgagagacctggtggtcagcgaggcctcgtag
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integrated database retrieval system
