Scophthalmus maximus (turbot): 118314369
Help
Entry
118314369 CDS
T09850
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118314369 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
smau04990
]
118314369 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
smau04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
118314369 (pdlim5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
118314369
NCBI-ProteinID:
XP_047185219
LinkDB
All DBs
Position
19:11543937..11594464
Genome browser
AA seq
572 aa
AA seq
DB search
MSSNYSITLLGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKAGIAVSDMVLSIDGIATE
GMNHLEAQNKIKSCADNLSLTLQKASSDPRAPPVAPKDDRSDIIKPVALTHPPPPPHSHP
HGSRPSTPPYSKAPRPYGGCGSKSEYPPSKSPFAAFIPSPSSAFTPASSFTSPPPPPPPP
VSYPSSSSSSPPVLVAPQPSVYNTPINLYSSENACEVAMGQRRGLLESQGGALPLQFNGV
PRKHVVDTDIHFYHVPTHADASRKRLTEDTEDWRPRSGTTQSRSFKILAQITGTEHAQDE
EAEKAKQTNEESEEPELNSHESAIVKTMIKGPAVTKGHGPQAGFILPSFGMKGNGSTSVP
RVPIPVRPVPQPHPKDQDTLVQMAEHIPAGTRTPMCGHCNMVIRGPFLVAMGKSWHKEEF
NCAHCRTSLADIGFVEEQGCVYCEHCYEDFFAPTCSRCQTKILGEVINALKQTWHVYCFQ
CACCQQPIRNNIFHLEDGVPYCEQDFYSLFGTGCHGCEFPVEAGDKFLEALGYTWHDTCF
VCAVCCTTLEGHTFFSKKDKPLCKKHAHTLKI
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtaactacagcatcaccctcttaggccctgccccctggggcttcaggctgcaa
ggagggaaggacttcaacatgcccctcaccatctccaggctgacggatggtgggaaggcg
gctaaagctggtatcgctgttagtgacatggttctgtccattgacggcatcgccacagag
ggcatgaaccacctggaggcccagaacaagatcaagagctgcgctgacaacctcagcctc
accctgcagaaggcctccagtgatcccagagctcctcccgtggcaccaaaggacgacagg
tcagacatcataaaaccagtggccctcacccacccccctccaccaccccattcccaccct
cacggctccaggccctccacccccccctacagcaaagcccctagaccctacgggggctgc
ggatcaaagagcgaataccctccgtcaaagtcgccattcgctgccttcatcccatcccca
tcctccgccttcacccctgcatcctccttcaccagtcctcctcctccacccccacctcct
gtctcttacccatcctcttcctcctcctccccgcctgtcctcgttgcaccccagccatca
gtgtataacacaccaatcaacctatactcctctgagaacgcctgcgaggtggccatgggg
cagaggcggggcctattggagagtcagggtggagccttgccactgcagtttaatggagtt
cccaggaaacatgttgtggacacagacatccatttttaccacgtgcccactcacgctgac
gccagcaggaagcgcttaacggaggacacggaggactggcgcccacgctccggcaccact
cagtccagatccttcaagattctggctcagatcactggcaccgagcatgctcaagatgag
gaagctgagaaagccaagcagacaaatgaggagagtgaggagcctgaactcaacagccat
gaatctgcaattgtcaagaccatgatcaaagggcctgctgtaactaagggtcacggtcca
caggccggtttcatccttccgtctttcggtatgaagggtaacggcagtaccagtgtccca
agggttcccatccctgtccgacctgtacctcagccccatcctaaagatcaagacaccctg
gtccagatggcagagcacattcctgcagggactcgtacgcccatgtgtggccactgcaat
atggtcatcagagggccctttttagtagcaatgggtaaatcatggcataaggaggaattt
aactgtgcccactgccgtacctccctggcagacataggcttcgtggaggaacagggatgt
gtctactgtgaacactgctatgaagacttcttcgctccaacatgcagccgctgccagacc
aagatactgggggaggtgataaatgccctcaaacagacgtggcatgtgtactgctttcag
tgtgcttgctgccagcagcccatcagaaacaacatcttccatctggaggatggagtacca
tactgtgaacaagacttctacagtttgtttggaactggatgccatggatgtgagttcccc
gtcgaggccggagacaagttcctggaggcccttggttacacctggcatgacacctgcttt
gtttgtgctgtttgctgtaccacgctggaaggccacacatttttctccaagaaagacaaa
cctctttgcaagaaacatgctcatacactgaaaatataa
DBGET
integrated database retrieval system
