Scophthalmus maximus (turbot): 118314496
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Entry
118314496 CDS
T09850
Symbol
whrnb
Name
(RefSeq) whirlin isoform X1
KO
K21879
whirlin
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
smau03037
]
118314496 (whrnb)
Cilium and associated proteins [BR:
smau03037
]
Primary cilia and associated proteins
USH complex and associated proteins
118314496 (whrnb)
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Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
T15H9-4_C
USH1C_N
Motif
Other DBs
NCBI-GeneID:
118314496
NCBI-ProteinID:
XP_035496887
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All DBs
Position
3:25447638..25508171
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AA seq
967 aa
AA seq
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MSADLERASHHTSLNSGGPGGRALSANVRRLHNALNVLLSDVEREHFIHCLNVYHAKRNV
FDLVQTLKVILSTPGKRQLLPMLRLVIPRSDQLLFDQYTSEGLYLKTDLLPSNGSAEGFE
DEGDSALQNYVSSIQEEQPPASGCPDGLCAAAELSASMAPPFLDGSVGEVRKVTLTRSRS
HEGLGFSIRGGSEHGVGIYVSLVEPGSSAEREGLRVGDQIVTVNDMMFNNVTHIDAVKVL
KGCKKLAMSVSSLGRIPGGYITNHVYSWVDPQGRSVSPPPDSQEANQRQGPGMEERTVSL
NMDDGRSLGLMIRGGAEYGLGIYITGVDPGSAADVGALKVGDQILEVNGQSFITICHDEA
VHILKTGRRLLMKVRDVGRLPHARTVVDETKWLCSQGIAETNATAGPTPVSNPAVNAGIH
ASVGGSGCSSRPSSARAPQVLGKPAVYRAVGPPGVQVSLEQQAYMLLTEPERKTMAYYLQ
EYQEGHIGAEPLAMALFELFNTHAKLSMLSEVRSLVLPQDLELYDRLVLHREREAHQAWH
GGLGVLHPQGLCNHAAPVIHDAVHTVPATQDELLASCESPPPFRGAPLQAQFRLPREKEL
KPSARLMQPGSGLLFSGPTQLLQDCLHKSLRSLPITHQPSPALAEHAGSGAGHHTSLGAL
HHTCQTFFQLSDAEHLNHPHYAHHFHHHPAHHNRPSSGHHTCPGFLHHRDSSGSAKPQGS
VRLSSRSSSYERSSILSKSASSSKAASPMPSPHPSPRPSPCPSPCPSLITPAAPPCSPDL
RCSPALIHKVIITDTNRLSADSRPQQRGATLSQLSDSGQTLSEDSGVDIAEAGGLSKDGS
PRPSKNQRGHLEQPGAHAPPPGATRQTGSPVPAPAATLVRVVKNANTLGIAIEGGANTRQ
PLPRIVTIQKGGSAHSCDQLKVGQVILEVNGVSLRGREHKDAARVIAEAFKTKDPDHIDF
LVVEPGP
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctgacctggagcgcgcttcgcaccacacatcgctgaactcgggcggccccggc
ggccgtgcgctctcggcgaacgtccggcggctgcacaacgctctcaacgtgctgctcagc
gacgtggagagggagcacttcatccactgtctcaatgtgtaccacgccaagcgcaacgtc
ttcgacctggtccagaccctcaaagtgattctcagcacgcccggcaaacgacagctcctg
cccatgttgcgcctggtcatcccgcggtccgaccagctgctcttcgaccagtacacgtcc
gagggactctacctgaagacggacctgctccccagcaacggcagcgcggagggcttcgag
gacgagggtgactcagccctgcaaaactatgtcagctccatccaggaggagcagcccccc
gcctcgggctgcccggacgggctctgcgccgcggcggagctgtcggcgtccatggccccg
ccgttcctcgatggctcagtcggagaagttcgcaaagtcaccctgacgcgctccaggagc
cacgagggactgggcttcagcatccgcggggggtcggagcacggcgtgggcatctacgtg
tccctcgtggaaccgggctcgtcggccgagagggaaggactgcgggtcggggaccagatc
gtgaccgtgaacgacatgatgttcaacaatgtcacgcacattgacgcagtgaaggtgctg
aagggatgcaagaagctggcgatgtccgtgtcgtctttgggtcggatccctggaggctac
atcaccaaccacgtgtacagctgggtggacccgcagggccggagtgtctccccaccgcca
gacagccaagaggcaaaccagaggcaagggcccggtatggaggagaggacggtaagcctg
aatatggatgacggtcgctctctgggcctgatgatcaggggcggtgctgagtacggtttg
gggatctacatcacgggagtggaccctggatctgctgcagacgtcggtgcattaaaggtg
ggcgaccagattctggaggtgaacggtcagagcttcatcaccatttgccacgatgaggca
gtccacatcctcaagacaggacgccgcctgctgatgaaggttagggacgtcggccgcctg
cctcacgcgcgcacagtggtggacgagaccaagtggctctgcagtcagggcatagccgag
accaacgccacagctggcccgactcctgtctccaatcccgctgtcaatgctggtatccac
gcgagtgtcggtggcagtggctgcagttcgagaccatcctcggccagagctccacaagta
ttaggaaagccggccgtataccgagccgtgggtccgccgggggtccaggtgtctctggag
cagcaggcctacatgctgctgacagagccggagaggaagacgatggcctactacctgcag
gagtaccaggagggacacataggagcggagccgctggccatggctctgtttgagctcttc
aacacacatgcgaagctgtccatgttgtccgaggtgaggagtctggtgttgccgcaggat
ctggagctgtacgaccggctggtgctgcaccgcgagagggaagcccaccaggcgtggcac
ggaggcctgggagtgctgcacccgcagggcctttgcaaccacgcggcccccgtgatccac
gatgcagttcacactgtccctgctacgcaggacgaactgctggcttcatgtgaatctcct
ccacccttcaggggtgctcctctccaggcccagttcaggttgccaagggagaaggagctg
aagccttcggcccggctcatgcagcccggctccggcctgctcttctctggcccaacgcaa
ctgctccaggactgcctccacaagtccctcagatccctccccatcacccaccagccctcc
ccggccttggcagagcacgccggctccggggccggccaccacacttccctgggtgcgctc
catcacacctgccagactttcttccagctctccgacgccgaacacctcaaccacccgcac
tatgcccaccacttccaccaccatcctgctcaccacaacaggcccagttcgggacaccac
acctgcccgggcttcctgcaccaccgggactcctccggctctgctaaaccacagggatct
gtcaggctctcgtccagatccagctcctacgaaaggtcctccatcttgtcaaagtcggcg
tcctcctcgaaagcggcgtctcccatgccgtccccgcatccatccccccgtccctcgcca
tgcccctccccctgcccctctctcatcacacccgctgctccgccctgcagtcctgacctc
cgctgctcaccggccctcattcacaaagtcatcatcacagacacaaaccggctgtctgca
gactccagaccacagcaaagaggggccactctgtcccagctgtcggatagcggccagacc
ctgagcgaggacagcggggtggacatagccgaggcggggggcctcagcaaggatggcagc
cctcgacccagcaagaaccagaggggccacctcgaacagccgggggcccatgcaccccct
ccaggggccacgagacaaactggctcgccggtcccggcgcccgctgccaccctggtgcga
gtggtgaaaaacgccaacaccctcggcatcgctatagagggcggagccaacacgcggcaa
ccgttgccgcgcatcgtaaccattcagaaaggaggctcggctcatagctgtgaccagctg
aaggtgggtcaggtcatcctggaggtcaacggcgtttccctgagaggccgcgagcacaag
gacgccgcccgcgtcatcgccgaggccttcaagaccaaggacccggatcacatcgacttc
ctggtggtcgagccgggaccgtga
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