Scophthalmus maximus (turbot): 118315105
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Entry
118315105 CDS
T09850
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118315105 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smau03041
]
118315105 (u2af2a)
Spliceosome [BR:
smau03041
]
Complex A
U2 snRNP components
U2 related factors
118315105 (u2af2a)
Complex B
118315105 (u2af2a)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
118315105
NCBI-ProteinID:
XP_035498008
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All DBs
Position
1:complement(13600343..13609634)
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AA seq
488 aa
AA seq
DB search
MSDFDEFERQLSENKQAERDKENRHHRRSSSRSRSRERKRRSRDRDRRSRDDRRTDSKER
RHRRSAPQNQQLAERGSPASFPQDNAGSRSPHREKKKKVKKYWDVPPPGFEHITPMQYKA
MQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFF
NAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRP
HDYQPLPGMSENPSVYVPGTQPINGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG
PLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNAT
LTSMNQTPVTLQVPGLNSSVTQMGGLPTEVLCLMNMVAPEELLDDEEYEEIVEDVREECS
KYGQVKSIEIPRPVDGLEIPGTGKIFVEFTSVFDSQKAMQGLTGRKFANRVVVTKYCDPD
AYHRRDFW
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaattcgaaaggcagctctccgaaaacaaacaagctgagagggac
aaagagaaccgccaccaccgccggtcctcctcccgcagccgcagcagagagaggaaaagg
aggagcagggaccgggacagacgcagccgagacgaccgtcgcacggacagtaaggagcgc
aggcacagacgcagcgcaccacagaaccaacagctagcagagcgtggctcaccagccagc
ttcccccaagacaatgctggaagccgttccccacaccgtgagaagaaaaagaaggtgaag
aagtactgggatgtccctccacctggttttgaacacatcactcccatgcagtacaaagcc
atgcaagctgctggccagatcccagccacagccctcctgccgaccatgactcctgatggc
ttggctgtcactcccacccctgtacctgtggtgggcagccagatgacccggcaggcccgc
cggctctacgtgggcaacatcccctttggtatcacagaggaatccatgatggacttcttc
aatgcccagatgcgtttgggtggtctcactcaggcccctggaaaccctgtccttgctgtg
cagatcaaccaggataagaattttgccttccttgagtttcgctcagtggatgaaactact
caggccatggcctttgatggtatcatctttcaaggccagagcctcaagattcgccgtccc
cacgattaccagccactgccgggcatgagcgagaatcccagtgtctatgtgcctggtaca
cagccaattaatggtgtggtgtccacagtggtacctgactctgctcacaagctcttcatt
ggaggcttgcccaactacctgaatgatgaccaggtgaaggagctgttgacgtcatttggt
ccgctgaaggccttcaacctggtgaaagacagtgccacaggcttatctaaaggatatgcc
ttctgtgaatatgttgatgtcaacctgaatgaccaggctattgctgggctgaacggcatg
cagctgggtgacaagaagctcctggtgcaaagagccagtgtgggatccaagaacgccact
ctgacgagcatgaaccagacccccgtgacgctgcaggtgccaggtctgaacagctcagtc
actcagatgggtgggctgcccaccgaggtgctgtgtctgatgaacatggtggccccagaa
gagctgctggatgacgaggagtatgaggagatcgtggaggacgtcagggaggagtgcagc
aaatacggccaagtcaagagcatcgagatacctcgccccgtggacggcctggaaatccct
gggactggcaagatctttgtggaattcacatccgtttttgactcccagaaggccatgcag
gggttgacaggcaggaagtttgccaacagggtggtggtgaccaaatactgcgatccagac
gcttatcaccgccgggacttctggtag
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