Scophthalmus maximus (turbot): 118315236
Help
Entry
118315236 CDS
T09850
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
118315236 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118315236 (myo5c)
04131 Membrane trafficking [BR:
smau04131
]
118315236 (myo5c)
03029 Mitochondrial biogenesis [BR:
smau03029
]
118315236 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smau04812
]
118315236 (myo5c)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
118315236 (myo5c)
mRNA cycle factors
P-body specific factors
118315236 (myo5c)
Membrane trafficking [BR:
smau04131
]
Others
Actin-binding proteins
Myosins
118315236 (myo5c)
Mitochondrial biogenesis [BR:
smau03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
118315236 (myo5c)
Cytoskeleton proteins [BR:
smau04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
118315236 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_22
AAA_16
Myosin_N
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
118315236
NCBI-ProteinID:
XP_035498251
LinkDB
All DBs
Position
7:12546591..12556550
Genome browser
AA seq
1742 aa
AA seq
DB search
MALLELYTEYNRVWIPDAEHVWKSAEIVRDFHSGDTVLELRLEDGTEHHHPLDPSNTRLP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFVESKIIYTYCGIILVAVNPYKQLPLYG
DAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNHKNQSIIVSGESGAGKTVSARYAMRYF
AVVSKSGSKTRVEDKVLASNPVTEAMGNAKTTRNDNSSRFGKYTEISFDRRYRIIGANMR
TYLLEKSRVVFQADNERNYHIFYQMCSCAQLREFKNLRLLSADKFRYTCTGGDVTIEGVD
DKKDLEETRRTFSMLGLKEDFQSDVFKVLAAILHLGNVEIRDSGKDKSSVSPSDPHVAVV
CELLGVSAEALVRWLCHRRIVLVAETVVKPVPRERAVNARDALAKHIYAHLFDCIINRIN
TALQVPGKPHAFIGVLDIYGFETFDINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIETKMGILDLLNEECLFPQGTDQSWLQKLYTYLDTNPLFEKP
RLSNEAFVIQHFADKVEYQCRDFLEKNRDTLYEELQDIMKDSEFPFLANFFREEEQSTGT
SKGVKVRPARPRVKAANKQLRASVGDKFSSSLSLLMETLNATTPHYVRCIKPNEEKLPFE
YDSRRVVQQLRACGVLETIRVSAQSYPSRWTYIEFYSRYSILMSHQEADLSDKKQTCKNV
LQRLIQDPNQYKFGRTKIFFRAGQVAYLEKLRLDRLRGASVTIQKHVRGWSQRRKYLRMR
EAAIVLQQYIRGKRTIHKMVSAATLKRGWATVVIQRHWRGYRTRQIYQLVRLASVTIQAF
TRGWMARKRYKKMVEEQKALILQKYARAWLARRRFQTMRRLVLNVQLSFRVQKLRKRIEE
QNKENCGLVERLTSLASTHSHTVDRLQGVEAQLEKSTRQRASLEARERTVKEGATLTIAQ
LQKEIDALTLEKQDLEKEFEASTKEAKESFDVIKRHLLHEKENEARLRKIAENNTEIQRH
DHEKEVEALKEEIKRMKEERVGLHRKIEEEGQVTSDLQEQVVQLTKHVKAIPELRRDLNN
LQNQRTNMDRKMKQQSEQARAKMNEITRQLLGGVVEEEVLLGLTPNDSEAIYEVEDLLAA
FEGLQKATRILENHQREQKESYETQLEGMQLKVDHLQNENSKLQNLFQEKSNINENIRQE
VSRLSSENSVIPELTLQVSELQRQKHELEVHVEEQSTELTEKTEEITNILQKKIKEESSQ
RRHFEEKAEALEEVKRELQGRVEDLEEENDHSKRQQLMETEAKSKLRQETSRLTAENMDF
EEQLDQKDRLIKKLQNQIHSLVSSQKAKEMSAAVIPKDYLGMLEFKREDEPMLIQNIILE
LKPKGVVVNMIPGLPAYILFMCVRYADYLNDEAKLKSLMNATICAVKKVIMSHHKDFELL
SFWLSNMYLLLNCLKQYSGEEEFMKHNTPEQKRNCLQNFDLSEHRQILSDLAIHIYHQLI
TVMEKTLTPAIVPGMLEHESLQGISSMKPTGFRKRSNSIYEDLETHTISSIIQQLSVFHS
TMNQHGMELGLIIQVVKQLFFQVGATTLNNIMLRKDMCSCRKGMQIRCNISYLEEWLKEK
ELQSFSVIDTLRPLSQAAWLLQVNKSTDEDAKEITDKCTELNSVQIVKILNSYTPIDDFE
KRVTSSFVRKVQSLLQDRDGSTQLMLDTDYRFQVTFPFCPSSQALELLQVPNSLHLGFLT
RI
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggctctgttggaactgtacaccgagtacaacagagtgtggattccagatgcagaacat
gtgtggaaatcagccgagatagtgagagattttcactctggagacactgttcttgaactg
cgtctcgaggacggcacagagcaccaccatccccttgacccgtcaaacacacgactcccg
ccccttcgcaacccagacatcctggtcggggagaacgacctcaccgccctcagttacctc
cacgaacctgccgtcctgcacaatctcaaagtacgatttgtggagtccaagatcatctac
acctactgtggtattatactggtggctgtaaatccctacaaacagctccctctctacgga
gatgcaatcattcacgcctactcaggccagaacatgggcgacatggaccctcatatattt
gcagtggcagaagaggcttacaaacagatggccagaaaccacaagaaccagtcgattatc
gtcagtggtgaatctggagccggtaaaaccgtgtctgctcgatatgctatgaggtacttt
gctgtcgtgagcaagtctggcagcaagactcgagtcgaagacaaagtcctggcatcaaat
ccagtgacagaggcaatgggcaatgcaaagaccaccaggaatgacaacagcagtcgattt
gggaaatacacagagatcagctttgacaggaggtatcggatcattggagcaaacatgagg
acgtacctcctagagaaatccagagtcgtctttcaggctgacaacgagcggaattatcac
atattttaccagatgtgttcctgtgctcagctgcgcgagttcaagaacctaagactgttg
agcgcagataaattccgctacacctgcacgggtggtgacgtcactattgaaggtgtagat
gacaagaaagacctggaagagactcgacggaccttttcaatgctggggttgaaggaagac
tttcagtcggatgtcttcaaagtgttggcagccatattgcatttgggcaacgtggagatc
agagactcagggaaggacaaatcatcagttagtcccagtgatccacatgtggccgtcgtc
tgtgagttgctgggtgtgagtgcagaggccctggtgcgttggctgtgccatcggaggatc
gttctggtggctgagacagtggtgaagccagtgcccagggagcgggcagtaaatgccaga
gatgctcttgccaagcatatctatgcacatctttttgactgtattattaacagaatcaat
acagcactgcaggtcccaggaaagccacatgcttttataggtgttctggacatttatggc
tttgaaacatttgacatcaacagttttgaacagttttgtatcaactatgcaaatgagaag
cttcaacagcagtttaacttgcatgtgttcaagctggagcaagaggagtacatgaaagag
gacatcccgtggacgctgatagatttctatgacaaccagccggtcattgacctgatcgaa
acaaagatggggatcctcgacttgcttaatgaagaatgtctgtttcctcagggcactgac
caatcctggctgcaaaagttgtacacctaccttgacaccaatcctctgtttgagaagccc
aggttgtcgaacgaggcttttgtaatacaacactttgcagataaggtggagtatcaatgc
cgagattttcttgaaaagaacagagacactctctatgaagaactgcaggacattatgaaa
gacagtgagtttccttttctcgccaattttttccgagaggaggagcaaagcactgggacc
agtaaaggtgtcaaagtgagacctgccaggcctcgggtgaaagcagctaataaacagctg
agagcgtctgtgggagataagttttccagctccctctcgttactgatggaaacactgaac
gctaccactccgcactatgtgcgctgcattaagccaaatgaagaaaaactcccatttgag
tatgactccaggagggttgtgcagcagctgcgagcctgtggcgtccttgaaacgatccgt
gtcagtgcacagagctatccgtccagatggacatatattgagttttacagccgatacagt
atcctaatgtcgcaccaggaagcggacctcagtgacaagaagcagacctgcaaaaatgtg
ctgcagagattgattcaggaccccaaccagtacaagtttggtcggacaaagatcttcttt
cgcgctggtcaagtagcttatctagagaagctgcgtctggatcgacttcgaggtgcgagc
gtgaccatccagaagcatgtccgcgggtggagtcagagaaggaagtacctgcgtatgaga
gaggcagccattgtcctccaacagtacatccgcggaaaaagaacaattcataaaatggtg
agtgctgccacactgaagcggggttgggcaacagtggtgatccagagacactggagaggt
taccgcacgagacagatctaccagctagtccgtctggcctctgtcaccatccaggccttc
acacgaggttggatggcccgtaaacgctacaagaagatggtggaagagcagaaggccctg
attctgcagaagtatgcccgagcatggctggctcgacggcgatttcaaaccatgcgccga
cttgtgcttaacgttcagctttcattccgagtgcagaagctccgaaagaggattgaagag
cagaataaagagaactgtgggctggtagaaagactgaccagcttggccagcacccattct
cacactgtggacagactccagggtgtggaggcacagctggaaaaatcaaccaggcagagg
gcatctttggaggccagagagaggacagtgaaagaaggagctactctgacgattgcacag
cttcaaaaggagatagatgccctaacccttgaaaagcaggacttggagaaagagttcgaa
gcttccactaaagaagccaaagagagctttgatgtaatcaagaggcatcttcttcacgag
aaagaaaatgaagcaaggctaagaaaaattgcagagaacaacactgagatccagagacac
gaccatgagaaggaggtggaggctctgaaagaggagatcaagagaatgaaggaggagaga
gtcggtctgcacagaaagatagaggaggagggccaggtcacatctgacctgcaggaacag
gtcgtccagctcaccaagcacgtcaaggccattcctgagctacgcagagatctgaacaac
ctgcaaaatcagagaactaacatggaccgaaagatgaagcaacagtcggaacaagcaaga
gccaagatgaacgagattacaagacaacttcttggtggcgttgttgaagaggaggttctt
ttagggctgactccaaatgactctgaggccatttatgaagttgaagatttgctggcagca
tttgaaggcctgcagaaagctaccagaatattggaaaaccaccagagggagcagaaggaa
agctatgagacccagcttgagggtatgcaattgaaagtggaccaccttcaaaacgagaac
agcaagctgcaaaaccttttccaggagaagagtaatatcaatgagaatattcgccaagaa
gtatccagactcagcagcgagaactcagttataccagagctgacactgcaggtttcagag
ctgcagagacaaaaacatgaattggaagtccatgtagaggagcagagcacagagttaaca
gaaaaaaccgaggagatcaccaacattcttcaaaagaagattaaagaagagagctcacaa
cgcaggcactttgaggagaaagctgaggcgctggaggaagtgaagcgggagcttcaaggt
cgtgtagaggacctggaagaggagaatgatcattcaaagagacagcagctgatggagacc
gaagccaagagcaaactgagacaggagacttcaaggttaactgctgagaacatggacttt
gaagagcagctggaccagaaagacagattaataaagaaactccagaatcaaatacatagc
cttgtgtcctcacagaaagccaaggaaatgtccgcggccgttattcctaaagattacctc
ggcatgttggagttcaagagagaggatgaacccatgctcatccaaaacatcatccttgag
ctgaagcccaagggtgtggtggtcaacatgatcccgggtctgccggcttacatcctcttc
atgtgtgtccgctacgctgactatctgaacgatgaagccaaactcaagtctctcatgaat
gcaaccatctgtgctgtcaaaaaggtcatcatgagtcaccacaaagactttgagttactg
tccttctggctctcgaacatgtatctgctgctcaactgtctgaagcagtacagcggggag
gaggagttcatgaaacacaatactcccgagcagaaaaggaactgcttgcagaattttgat
ttgtcagaacacagacaaattctcagcgacctggccatccacatctaccatcagcttatc
acggtcatggaaaagaccctgactcctgcaattgtgcccggtatgctggagcacgagagt
ctacaggggatttctagcatgaagccgacaggcttcaggaagcgttccaacagtatctac
gaggacttggagacccacaccatctcctccatcattcagcagctcagtgtcttccactcc
accatgaaccagcatggcatggagctgggcctcatcatacaggtcgtcaaacaactgttt
ttccaagtgggcgcaaccaccctcaacaatatcatgctccgcaaggatatgtgttcctgc
aggaagggaatgcaaatcaggtgtaacatcagttacctggaggagtggctgaaggagaag
gagcttcaaagcttcagtgttatagatactctgaggccgttgtctcaggctgcttggctg
ctgcaggtcaacaagtccacggatgaggacgccaaggagatcactgacaaatgcactgag
ctcaactctgttcagattgtcaagattttgaattcatacacgcccattgatgattttgag
aaaagggtgacgtcatcattcgtccgcaaagttcagtcattactacaagatcgtgacggg
tccacacagctgatgctggacacagattatcgtttccaggtcacgtttcctttctgtccg
tcctcgcaggctctggagctgctgcaggtcccaaacagtctccatctgggctttctgacc
aggatctga
DBGET
integrated database retrieval system
