Scophthalmus maximus (turbot): 118315279
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Entry
118315279 CDS
T09850
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118315279 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smau03009
]
118315279 (utp4)
Ribosome biogenesis [BR:
smau03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
118315279 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40
Beta-prop_WDR5
WD40_Prp19
WDR55
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
DUF7165
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Ge1_WD40
CPSF_A
Motif
Other DBs
NCBI-GeneID:
118315279
NCBI-ProteinID:
XP_035498336
LinkDB
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Position
7:25695016..25702414
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AA seq
685 aa
AA seq
DB search
MGEFTVHRVRFFDYMPSAIRAMAFNPRTERLAVARADGAVEIFNFADNYFQEKVIPGRDG
GTVEALCWVGPRLFGAGLNGAITEYDLENLRPRYSVEAYGGPIWTVSGDSAGTMLAVGCE
DGTVKMFEILDETIRFQRNLERQKGRIISLSWHPSGALIAAGMIDMIRIFDAETGRATHR
LLVERGAGASKSREVVVWSVVFLSDHTIVSGDSAGKVQFWDGHTGTLVRTHLVTKWDVLA
LAVSQDESSVVAGTSESIVVQFQFISSTVGRQDNEWVRTRTFKNHSHDVRALVHTETAVV
SGGMDTQLVVRPLLDKVEKNTQESSLRKIAFPHRSLVCCAKKAGLLLFQFPEHLELWRLG
ESEGHGRAGDSLPVKRKPEKLIHLKRKGDDHIRCSAVSPCGGWLVYATVSGVRLYRIQHD
NNNIGVTKVSKLPKSLCSAHQLCFSSDSSKLFAASGLSSVVVVALDPLECKHLHTLRPKS
GSRQPVHLLCVSDDGKWLASANTDCEVHVYNLKKMKLHCKVPVYSSCPTAIGINPVTSNL
VTVHADQQVFEFSLQQKEYTEWSRRLQQRGLHPVWLQRDTPVAHITFNPRNPAHIVLHDV
FMLCIIDQSLPLPEARTPLLNQMMLRSLPEAERSRQSHAFKICKSFQHLLSMTLLDDQSL
VAVERPLLDIVSQLPAPVRQKKFAT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggggagttcacggttcaccgggtccggttcttcgactacatgcccagcgcgatccga
gcgatggcgttcaacccccgtaccgagcggctcgccgtggctcgggccgacggcgccgtg
gagatcttcaacttcgctgacaactacttccaagagaaggtgataccgggacgggatggc
gggaccgtggaggccctgtgctgggttggcccgcgtctgttcggcgccgggttgaacgga
gcgatcaccgagtacgacctggagaacctgaggccgcggtacagcgtggaggcgtacggg
ggcccgatctggaccgtcagcggcgacagcgcgggaacgatgctcgcggtcggttgtgag
gacgggacggtgaagatgttcgagatcctggacgaaacaatccggttccaaagaaacctc
gaaaggcagaaaggtcgtatcatatctctgtcctggcatccgtctggtgcgctgatcgcc
gccggcatgatcgacatgatccggatcttcgatgcggagacaggccgcgccacgcaccga
ctgctggtggagcgcggcgccggggcgtccaagagccgagaggtggtggtgtggagcgtc
gtcttcctgtccgaccacaccatcgtcagcggcgactccgcggggaaggtccagttctgg
gacggacatacgggaacgctggtcagaactcacctggtcaccaaatgggacgtcctggct
ctcgctgtctcgcaggatgagagcagcgtggtcgcggggacgtcggagtccatagtcgtc
cagttccagttcatctcatccactgtgggacggcaggacaacgagtgggtcagaaccagg
acctttaaaaaccactcacacgacgtgcgggcactcgtccacacagagacggcggtcgtc
tctggaggtatggacacgcagctggtggtgcgccctctgctggacaaagtggagaagaac
acgcaggagtcgtcgctgcgcaaaattgcttttccgcacaggagtctggtctgttgtgca
aagaaagcaggactgttgctcttccagttccccgaacacttggagctatggaggttagga
gagagtgagggacacggaagagccggcgacagtttacctgtgaagaggaaaccagagaaa
ctgatccacctgaagaggaagggcgatgatcacatccgctgcagcgccgtgtctccctgc
ggcggctggctcgtctacgccaccgtctccggcgtccgtctctacaggatccagcacgac
aacaacaacatcggtgtcaccaaggtgtccaaattacccaagagcctttgctccgcccac
cagctctgcttctcctccgactcgtccaaactcttcgccgcctccggcctctcctccgtc
gtcgtggtcgccctcgacccgctggagtgtaaacaccttcacaccctcagacccaagtcg
ggctctaggcagcccgtccacctgctgtgtgtcagtgacgatgggaagtggcttgcgtcg
gcaaacacggactgtgaggttcacgtctacaacctgaagaagatgaagcttcactgtaaa
gtcccggtgtacagctcctgtcccacggccatcggcatcaacccagtgaccagcaacctc
gtgacggttcacgctgaccagcaggtgtttgagttctccctgcagcagaaggaatacacc
gagtggagccggcggctgcagcagcgaggtcttcaccccgtgtggctgcagcgcgacacg
cccgtcgcccacatcaccttcaacccgaggaacccggcgcacatcgtcctgcacgacgtc
ttcatgctctgcatcatcgaccagagtctgcccctccccgaggcgaggaccccgctcctc
aaccagatgatgctgaggagtctccccgaggccgagaggagccgacagagtcacgccttc
aagatctgcaagagcttccagcacctcctgtccatgactctgctggacgaccagtctctg
gtggcggtggagcgccccctgctggacatcgtgtctcagctgcctgcacccgtccgccag
aagaagttcgccacataa
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