Scophthalmus maximus (turbot): 118315380
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Entry
118315380 CDS
T09850
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118315380 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118315380 (edc4)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118315380 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
118315380 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EDC4L
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
118315380
NCBI-ProteinID:
XP_035498524
LinkDB
All DBs
Position
7:complement(24014517..24035602)
Genome browser
AA seq
1396 aa
AA seq
DB search
MASSSDIDIEGATQHLRDILKLDRPSSSGGTDAQLSVGQRKPSFNGELNGLLGAAGLLGN
ADRSTMSDSTCPISTDLSIAQECQIICLSGDDGSTCIPITSNNVEIVASQDSSINSKARG
SSKVKIQPVAKYDWEHKYYYGRLIAVSNSFVAYAIRGANNHAMIRVLSLGSAERSLLKGF
TGAVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGNKILDQIVIHIKRPEDTPLNSHRRL
IWCPFILDDNEENQDDTSQTLALLHEDRAEVWDLEVLRANNSSWPVDATELKDGLISVKG
HTQRVSEGALSPDGTVLATASHDGYIKFWQIYVEGGQDKPRCLHELRPHGGRPLSCLLFC
DNHKRQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSALPSLKASLD
LAAEYLILTDVQRKVLYVMELGQDLDRGKASFTAVSEFLLTHPVLSFGVRDVTQCRLQHT
EVLPAEEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPSARSSSSVFLSH
SDSQDGFAGFSDHLTDQSSDKESGSGSQNDLRKIPSLPAPVDFLSNSVTGGPMPKLMTPD
AFMTPSTSVPASPGSSASSLTIVTAISSNSDSTNRAMDDVSQSPNRAENSSSCGSLTLSA
STSSPRAASAVLLPGLESLQVLASPIGLLALDSPQIMDSPLLPTLASPTRARSPDVISSA
STAMSQDMPEIASQTLQLQRGLVSSLDPSSLSALQTDSMASAASALHLLTSQRTANNSLL
PLELGGADGPAGGAVESEPPRLSHTPSLLENALSQENPGAGGGSSDCSASLTPWPAAPDI
TRETRNSLRDNGLGDCSREESKDRHLSSPFHRRSYHLSQNDSQDTGPEQSDPDDEVASLA
SSSGNCGSRSSHRLPVKDWKTSPRGSPKVKRKTKKDDGESSQSRQMDSGQMNVEVQDELL
MLLRSQQRELTELRGQIEAMQSSIMSQVEHVLSNHQEQEQRRLERVLAQNQNHQQHLQEQ
LGQQLGHALSSALTNRMDKVLREEMKKTVPQTISKSLEPVTGQLSNTIAAKLTAVEVTLK
DNVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFK
QGTHEYIQQLETHVKNKKQREQEARDPIIGQLQQMVDSFQSTSDQLANNITSNVRAEVQH
QIQMMVGNLQESILSHVQRIVKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPTAHLDYQ
TQQANILQLLQQGHLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLI
QQLSSNLSTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFAFLQQDPHSLLS
KRARRLMMMLQGLVNH
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccagctccgatatcgatattgagggtgcgacccagcacctgcgggacatcctc
aagctcgaccggcccagcagcagcggcggcaccgatgctcaattgagtgtcggtcagagg
aagccgtcctttaatggcgagctgaacgggctgctgggggcggcgggcctcctggggaat
gccgacaggtcgaccatgtcagactccacctgtcccatctccacggacctcagcatcgct
caggagtgtcagatcatctgcctctcgggcgacgatgggtccacctgtatccccatcacc
tccaacaacgtggagattgtggcgagtcaagactccagcatcaacagcaaggccagaggc
agcagcaaggtgaagattcaacctgtcgccaagtacgactgggaacacaagtattattat
ggcagactgatcgctgtgtccaactccttcgtcgcctacgccatcagaggagccaacaac
cacgccatgattcgtgtcctgagtctgggctctgcggagcgttccctgctgaagggattc
actggggccgtcacagacctggcgtttgcccacctcgactcctccctgctgggctgtgtg
gacgaagcgggcaacctgatggtctggcaactcacctgcaccggaaacaagatactagac
cagatagtgattcacatcaaacgaccggaggacactccgctgaactcccaccgacgcctc
atctggtgcccgttcattctggatgacaatgaggagaaccaggacgacaccagccagacc
ttggctcttctgcatgaagacagggcagaggtatgggacctggaagtgttgagagccaac
aacagcagttggcctgtcgatgccacagagctgaaggatggcctcatctcagtgaaggga
cacacccagcgagtcagtgaaggggccttgtctccggatggaacagtgttggccacagcc
agccacgatggatacatcaagttctggcagatctacgtagaagggggacaggacaagccc
aggtgtctccatgagctgcggcctcacggcggccgccccctctcctgccttctcttctgt
gacaaccacaagaggcaggacccagatgttcctttctggcggttcctcataactggagcc
gatcagaaccaggagttgaagatgtggtgcactgtttcctggacatgtttacagactatc
aggttctctccggatccgttcaactcctcggctctgccgagtctgaaggccagtctggac
ctcgctgcagagtatctcatcctcaccgacgtccagaggaaggttctgtatgtgatggag
ctgggccaggacctggacagagggaaggccagtttcacagctgtgtccgagttcctgctg
actcatcccgtgctcagcttcggggtccgggatgtcacccagtgccgcctgcaacacacc
gaggtcctgcctgcggaggaggagagcgagagcatgaccacagagggaactcaaggaccc
acagagtccaagtctggaatccagattaaactctactgcgttcacaccaagagtctgcag
gacgtccagatctggtttcagcccagcgcacgttccagttcatcagtgttcctgtctcac
tctgattctcaggatggtttcgctgggttttcagatcatctcaccgaccagagctctgac
aaggagtcgggaagtggctcccagaacgacctgcggaagatcccttctcttcctgctcct
gtcgacttcctgtccaactctgtcactggcggtccgatgccaaagctgatgactcccgac
gccttcatgacgccaagcacttcggtgccagcgtctcccggcagcagcgccagcagtctg
accatcgtaacagcgatcagcagcaactcggactcaactaacagagcgatggatgacgtc
agtcagagtcctaacagagcagagaacagcagcagctgtgggagtctgaccctctctgcc
tccaccagcagcccgagagccgcctctgccgtgctgctgccgggactggagagcctacag
gttttggcgtccccaatcggccttctcgcgctcgacagccctcagatcatggactctccc
ctcttgccgacgctggcatctccgaccagggcgcgctcccccgacgtcatctcctcggcc
tccaccgccatgtcccaggacatgccggagatcgcgtcccagaccctgcagctgcagcgt
ggactcgtgtcgagcctggatccctcatcgctgtccgctctccagacggacagcatggcc
tccgctgcctcggcgctgcaccttctcacctcgcagcgcacggctaacaacagcctgttg
cccctcgaactgggaggagcagatgggccagcaggtggcgctgtagagtcagagcccccc
agactcagccacactccgtctctactggagaacgccctgtcgcaggagaaccccggagca
ggaggagggtcctcggactgcagcgccagcctcacaccgtggcccgccgcacctgacatc
accagagaaaccaggaacagtctcagggacaatggtcttggagactgttcaagggaggaa
tcgaaggacagacacctgagctcaccgttccaccgccgctcgtatcacctctcgcagaac
gacagtcaggacaccggtccagagcagagcgaccccgacgacgaggttgccagcttggcg
tcgtcctcggggaactgtggctctcgctcctctcaccgactcccggtcaaggactggaag
acgtcaccgcgaggctcgcccaaagtcaagaggaagaccaagaaagatgatggtgaatca
tcacagtccaggcagatggactctggtcagatgaacgtagaagtgcaggacgagctgctg
atgctcctgcgcagccagcagagggagttgactgagctgcgtggacagatcgaggccatg
cagagctccatcatgtcccaggtggagcatgtcctgagcaaccaccaggagcaagaacag
cgccgactggagcgagttctggcgcagaatcagaatcaccagcagcatctccaggagcag
ctcggccagcagctgggccacgccctcagctccgccctcaccaacaggatggacaaagtg
ctgcgagaggagatgaagaaaacggtcccacaaacgatctccaagagcctggagcccgtg
actgggcagctgagcaacaccatcgctgcaaagctgacggccgtggaggtcaccctcaag
gacaacgtcagcaaggtggtcaagtccaagaacacgacagatgcaatcggtcgagcggcg
gccgaggcgatgcaggggccaatccaggcggcctacaaagacgccttccagagcatcgtg
ctgcccgttttcgagagaggctgccagtccatgttccagcaaatcaacgacagcttcaaa
cagggaacgcacgaatacatccagcagctcgagacccacgtgaagaacaagaagcagcga
gagcaggaggcgcgcgaccccattatcggccagctccagcagatggtcgacagcttccag
agcaccagcgatcagctggctaacaacatcacgtcgaacgtgcgggccgaggtccagcac
cagatccagatgatggtgggaaatttgcaggagtcgatcctcagccacgtgcagcggatc
gtcaagggggaggtgagcctggcgatgaaggagcagcaggcggcggtcacctccagcatc
atgcaggcgatgaggtcggcggccggcacgcccgtccccacggcgcacctggactaccag
acgcagcaggccaacatcctgcagctcctgcagcagggacacctcaaccaggccttccag
caggctctgtcggcgacggacctgaacttggtgttgtacgtgtgcgagaccatcgactcc
cagcaggtgtttgggcagcacccctgccccctgagtcagcccgtgctgctgtcgctcatc
cagcagctctcgtccaacctgtccacccgctccgagctcaaaatcagttacctggaggac
gccgtgatgaacctggaccacggcgacccgctcaccagggaccacatgtcgtccgtgttg
gcccaggtccggcccaagctcttcgccttcctgcagcaggacccgcacagcctgctcagc
aagcgggcgcggcgcctgatgatgatgctgcagggcctcgtcaaccactag
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integrated database retrieval system
