Scophthalmus maximus (turbot): 118315777
Help
Entry
118315777 CDS
T09850
Symbol
acanb
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smau00535
]
118315777 (acanb)
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118315777 (acanb)
04091 Lectins [BR:
smau04091
]
118315777 (acanb)
Proteoglycans [BR:
smau00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
118315777 (acanb)
Glycosaminoglycan binding proteins [BR:
smau00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
118315777 (acanb)
Lectins [BR:
smau04091
]
C-Type lectins
Lecticans
118315777 (acanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
UL45
Ig_3
EGF
I-set
Ig_CD22
Motif
Other DBs
NCBI-GeneID:
118315777
NCBI-ProteinID:
XP_047189459
LinkDB
All DBs
Position
7:complement(7475947..7493961)
Genome browser
AA seq
1391 aa
AA seq
DB search
MTPLLLLCVSLPLISATISFEDHENLDGTLRVSIPMEMPLQPLLGGKVVVPCYFQDNTVS
DPGAPTIPPLSHRIKWSYVTKEKVTTILVASEGKVQVDTEYLDRVTLINYPLVPTDATLE
ITELRSKDSGTYRCEVMHGIEDNYDSVDIQVQGIVFHYRAISTRYTLTFEKAKAACTQNS
ATIATPAQLQAAYDDGYHQCDAGWLSDQTVRYPIQEPRERCYGDKENFPGVRTYGVRDVN
ETYDVYCFAEKMSGRVFYSMSVEKFTFYEAGDQCTKLGARLATTGELYLAWKAGMDVCNA
GWLGDRSVRYPINIARTQCGGGLLGVRTVYLFPNQTGYPYPDSRYDAICFRDGEDEDVVP
MRTTPFPDIIRITPAPGVYPGLSPAPGGEEIRGGEVDILSPLPVPPRVTDTYTKVTTVVR
EPGLDLTGFDAAMAPTGVVFHYRPITGRYTLTFLEAQQACQSIGAVIASPLQLQAAFEKG
LHQCDAGWLRDQTVRYPIVSPRDNCAGNLPHLPGVRSYGLRPASELYDVFCYVERLQGEV
FFTSDYDSFSYDEAVQHCQKLNTTLATTGQLFAAWKQGLDKCRPGWLMDRSVRYPITTPR
SHCGGGQVGVHIIYAFPNQTGFPDEHSRYDAYCFKAEIPTVHSENKTSVNLTIVMEDVIN
KTTVTIDHFAPTVETTVVYNETESSVNITEIEEVISKTIITTHQVAPPVDVSGSGSADHS
ASGETSGASGVSSASGDASGLGQDITYSGHTDIVSGDQSASGGPQEAEGSTVLFSSGELG
SASGSGEGIDGQQSGFGVSGSGFTSGSGDISGSGDISARLDISGSGDISGSGDISASGYI
SASGDISASGYISASGDISGSGDISGSGDISASGDISGSGGDLIIIMVDGKMVEVSKTQS
QPDEQLLGKEGIEIIESSASGSASASGSGSGGFSGISFIDHSAVDLTVEPSGEQEVSGYR
PFGSGFHSGFPSGFPSGASGSGSASGDSVQHRGDVIYVTDDEMIEVTVPPLERQPQQGRG
VVEVSGAGSGSGIHHEEFSGALEQSSHLSGSGAAHEKPTTEKLSVILPPGSTMTYSEYIG
SLGQSGLGEEEQEGRTVYVVTPDSAYTSPTTAPSLSLAVPAVVEQPEVVEDPCDPNPCGS
GSCSAQGELAVCQCPNGFTGEDCSTPVQGCADGWLEFGGSCYLHFAERYTWTDAEQRCQE
LNAHLVSINSQEEQEFVNSTQQTNTHGQDYQWIGLNDKDVQNEFRWTDRSPLTFVNWRPN
QPDNYFNSEEDCVVMIWHEGGQWNDVPCNYHLPFTCKTGPVVCGAPPEVEHGRPMGSGRD
RYPVDSIVRYQCDAGYTQRHLPVIRCMPDGQWAEPQVECTEAGANSNRLHKRSVRRRSKA
VSSQQEQRKLL
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgacccccttgcttctgctgtgcgtgtccttgcccctcatctcggcaacaatatcattt
gaagatcatgagaacttggatggcacattgcgtgtcagcattcccatggagatgcctctc
cagcctctgctgggaggcaaggtagtggtaccgtgttacttccaggacaacaccgtcagc
gaccccggagccccgaccatcccgccgctctcccaccgcatcaaatggtcctacgtcacc
aaggagaaggtcaccaccatcctggtggcgtcggagggaaaggttcaggtggacacagag
tatttggacagggtgaccttgatcaactaccccctggtgcccaccgacgccaccctggag
ataacggagctgaggtccaaagattctggcacttaccgctgcgaggtgatgcacggcatc
gaggataactacgactccgtggacatccaggttcagggcatcgtgttccactaccgagcc
atctccacccgctacacgctgacgtttgagaaggccaaggcagcctgtacccagaacagc
gccaccatcgccactccggcccagctccaggctgcctacgatgatggataccaccagtgt
gatgctggatggctctctgatcaaaccgtcagataccccattcaagagccccgcgagcgt
tgctacggagacaaggagaacttcccgggcgtgagaacctatggagtgagagatgtcaat
gagacctacgatgtgtactgttttgctgagaagatgtcaggcagagtcttctactccatg
tctgtggagaagtttactttctatgaggcaggggatcagtgtaccaaacttggcgctcgg
ctcgctaccaccggcgaactttacctggcctggaaagctggcatggatgtgtgtaacgct
ggctggctgggtgacaggagcgtgcgctaccctattaacatcgccaggactcagtgtgga
ggagggctcctgggtgtgagaactgtctacctgttccccaaccagacaggatacccctac
ccagactctcgttacgatgccatctgcttcagagacggtgaggacgaagatgttgtgcct
atgaggaccacccctttcccagacatcatccgcataacacctgcccctggggtgtaccca
ggcctctcccctgcacctgggggggaagagatcagggggggcgaagtggacattctctcc
ccgctgcccgtcccaccgagagtgaccgacacatacaccaaagtgactactgttgtgcgt
gagcctggactcgacctgacgggcttcgatgctgccatggctcccacaggtgtggtgttc
cactaccgacccatcactggtcggtacactctgaccttcctggaggctcagcaggcctgc
cagagtattggcgcagtcattgccagtccgctgcagctgcaggcagcgttcgagaaaggc
ctgcaccaatgtgacgccggctggctccgtgaccagactgtcaggtatccaatcgtgtca
cccagagataactgtgcaggtaatctgccacaccttccaggagtcaggtcctatggcctg
agaccagccagcgagctttacgatgtattttgttacgtggaacgtttgcaaggtgaggtc
ttcttcaccagtgactatgacagtttctcctatgatgaggccgtgcagcactgtcagaaa
ctgaacaccaccctggccaccaccgggcagctgttcgctgcctggaaacaaggacttgac
aagtgccgcccaggctggctgatggaccgcagtgtccggtaccctatcacaacccccagg
tcccactgtggaggaggccaggtgggggttcacatcatctacgccttcccaaaccagaca
gggttccccgatgagcactcacgctatgatgcttattgtttcaaagctgaaatcccaaca
gttcacagtgaaaataaaaccagtgtgaatctgacaatagtgatggaggatgttatcaat
aagacaacagtcacaattgatcactttgctcccactgttgaaactactgtagtctacaat
gaaaccgaatccagtgtaaatatcactgaaatagaggaggttatcagcaagacaatcatc
acaactcaccaagttgctcctcctgttgatgtgtcaggatctggttcagctgatcattca
gccagcggggagacctcaggagcgtctggcgtctccagtgccagtggtgacgcctctggt
ttaggacaggacatcacctacagcggacacactgacatcgtctccggagaccagtctgcc
tctggaggtccccaggaggcagaagggagcaccgtcctcttctcttctggcgaactgggt
agtgcttctggatctggggagggcattgatgggcaacaatctggcttcggggtatcagga
tcaggctttaccagtggcagtggggacatcagtggcagtggggacatcagtgccagattg
gacatcagtggcagtggggacatcagtggcagtggggacatcagtgccagtgggtacatc
agtgccagtggggacatcagtgccagtgggtacatcagtgccagtggggacatcagtggc
agtggggacatcagtggcagtggggacatcagtgccagtggggacatcagtggcagcggt
ggagacttgataatcatcatggtggatgggaagatggtggaggtgtcgaaaacccaaagt
caacctgatgagcagttgctaggcaaagagggcatcgagataatcgaatcaagtgcatcc
ggatcggcaagtgcctctgggtcaggctccggtggattttctggcatctcattcattgac
cacagtgctgttgacctgacagttgagccatccggtgagcaggaggtgtctggatatcgt
cctttcggatcagggttccacagtggctttcccagtggtttcccatccggtgcttcaggc
agcggctccgcctctggagactctgtccagcatcgtggtgatgtcatctatgtaacagac
gatgagatgattgaggtcaccgtaccgccactggaacgccaacctcagcagggcaggggg
gtggtggaggtaagcggggcaggaagtgggtcagggatccaccatgaagaattcagtggc
gctttggagcaaagctcacacctctcaggaagcggagctgctcatgagaaaccaacaact
gagaagctttctgtcatcttgccgcccggatctacgatgacttactcagagtacattggt
agtcttggtcaatctggactcggggaggaggagcaggaaggccgcacagtttacgtcgtg
acccctgattcggcctacacctccccaaccacagcaccatcgctgtcattggcagtccct
gctgttgtggagcagcctgaagtagtggaagacccttgtgatccaaacccctgcggttca
ggatcctgttctgcgcagggagagctcgccgtgtgtcagtgtcccaacggcttcactggt
gaagactgctcaacaccggtgcagggctgtgctgacggctggttggagttcgggggcagc
tgttatctccactttgccgagaggtatacctggactgatgccgagcagcgctgccaggag
ctcaatgctcacctggtcagcatcaactcccaggaggagcaggagtttgtcaactcaaca
caacagaccaacacccatggacaggactaccagtggattgggcttaatgacaaagatgtg
cagaatgagttccgctggacagacagaagtcctctgacctttgtgaactggaggcccaac
cagccggacaactacttcaactccgaggaggactgtgtggtgatgatctggcacgagggc
ggacagtggaatgacgtgccctgcaactaccaccttcccttcacctgcaagactggacca
gtcgtgtgcggagctccccctgaggtggaacacggccggccaatgggcagcggcagagac
cgctaccccgtcgactccatagtccgctaccagtgcgatgcaggctacacacagcgccac
ctgcctgtcatacgctgtatgccggacggacagtgggcggaaccgcaagtggaatgcaca
gaagccggcgccaacagtaacaggctacacaaaagatccgtcaggagaagaagtaaagca
gtcagcagccaacaggaacagaggaagctgctctga
DBGET
integrated database retrieval system
