Scophthalmus maximus (turbot): 118317227
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Entry
118317227 CDS
T09850
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau02010
ABC transporters
smau04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
118317227
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118317227
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
smau02000
]
118317227
Transporters [BR:
smau02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
118317227
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
ABC2_membrane_2
AAA_23
AAA_29
MukB
Motif
Other DBs
NCBI-GeneID:
118317227
NCBI-ProteinID:
XP_035501641
LinkDB
All DBs
Position
12:3140424..3301634
Genome browser
AA seq
2242 aa
AA seq
DB search
MGLLTQFTLLLWKNFTLRKRQKVRLVVEVIWPLFLFFILVWVRSSNKPVHKGQCHYPNKA
MPSAGVLPWLQGMICNIDNPCLSHPTPGETPGQVNNFNNSIIAGMLIELQTLLVNRSILR
KTKLLADDIDQWASVLSQSNPGNAQPVTLRSILRDNETFSTHLKENLSVPPTVVQSLLNA
TVNPTMGIPQPGTLRAILCEGTDLDDYVQFNSQAEKKAFQNVSCSLTQQQLINTQQVLLQ
NLDVRKVLSKLPLDLNAAETLTLMRDTSRNAVPVIEEMARLQNSIIFKAATTLDFQEDMI
GSINMLLCGKQPDFNSTNMTLSLQSPRQMANNRSISTTGNSSDAFCQTLVETLESTPVLR
NIWSTVKPLLQGKVLYTPDTPAARLMVNKANSTFNALAKIKEITDLWDELGPRVWDFLQN
SSQVNTIRALLANPVFAALLDQRLNGTGWTAQQLANFLYNGPPEDRPPGTPPYDWRDVYN
ATTQILKLLSTFLGCLDLNKFVAVPDETQLVSEALELLKNDTYWASVVFENLQPDSSQPP
PYLKYKIRMDVDEVERTNKLKERLWSPGARDKSFNDLRYIWGGFAYLQDMMDHGIIEVQT
SKTQPLGVFAQQMPYPCFVDDVFVQSIGGIIPMFLVLAFMYTVCMTIKGLVLEKELRLKE
VLRAVGIQNGALWASRFTENIVLLTVPCLLISVMVKYGQVLQYSDPSVIFVFLLVFCLTT
ITQCFFISVFFSKANLAAACGGLIYFVLYLPHILCYAWRDVMGFGAKVAVSLLSCVAFGF
GCESFSKYEEQGIGIQWYNINNSPEEGERYTFLLSIIMMLFDAALYWTLTWYIENVFPGQ
YGIPKPWYFPFAASYWCGRASVTDVDPGFLKDTSVHNEYMEKPPPNMKAGISIRNLVKIY
KTGKKLAVDGLTMDFYENQITSFLGHNGAGKTTTMSILTGLFPPTSGTALINGYDIHTDM
DSIRKYLGMCPQHNVLFNELTVEEHIYFYARLKGHNYEEVKIEMDQLIRDVGLPHKRKDL
AKNLSGGMQRKLSVAIAFVGGSKIVILDEPTAGVDPYARRGIWELLLKYKQGRTIILSTH
HMDEADILGDRIAIISHGKMRCCGSSLFLKKRFGSGYYLTLVRDGTEKMAAQRNGIIHSQ
AIEEKDHPLSSSPDDGISSQNWSNSDPSDLTAVGQLVRRNVPEAVFLESIGQEITYILPY
SGARDGTFALLFQELDLAMADLGLTSYGISDTTLEEIFLKVAEDTGVDTEIQTTEELFVK
DCKKSSRKSKRNSIASIRAPPEQVSGMTELKGRFTSKVKDLKRNTTDSGKGSTVITGWGL
IRRQFLALFIKRFHHARRSRKGLIAQVVLPAAFVCLSLFFSLIVPPFSEYPSLELQPWMY
GLPQTTFYSNDGPNNVEVSQVVETLVNNPGFGTRCMIENPIPKLPCSPTGSDWFTPPVDQ
SVTDIFLNGNWSMSNPSPSCQCSTPKRTIMLPDCPPGAGGLRPPQRIQSTTDTLLDLTGR
NMTDFLVKTFEHSGKTRFGGISVGGVNSQVRLTEEEIEVALRDLKDIFSSFQDNVTDQLL
QKSETLLKKLGTRDNVKVWFYNQAWHGMVSFLGVANNAILRGNLPAGKSPSQYGISVSNH
PLNLTKEQLSFVALATSSTDVVVSICVIFAMSFIPASFVLFLIQERVNKAKHLQFVSGVN
PVVYWLANFAWDMCNYIIPCLIVIAIFLAFQQKAYVSPSNLPALILLLIFYGWSITPMMY
PASFIFSVPSTAYVVLTCINLFIGINGSIATFFMELYNDDKVARINDIVKQVLLIFPHVC
LGRGLIDMAKNQAMATIFSSFGEDRFVDPLSWEMVGKNLCAMSIQGAVMFVITILIQYKF
FCKPRLISGKSSAEEEDVDVARERERVYEGKALNDLLRICDLTKVYPRKSAPAVDRLCVG
VPAAECFGLLGINGAGKTTTFKMLTGDIPVSGGEAFLNGYSIRTEMRDVHQNLGYCPQFD
AINDLLTGREHLEFYARLRGVPEHEITMVAEWGIQKLGLVKYSNKSAGTYSGGNKRKLST
AIALIGCPPVIFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEALCTRMA
IMVNGRFKCLGSIQHLKSRFGDGYTVIVRVGDSPLALKPVEDFVQQTFPGSVLKEKHHNT
LQYQLPYTQGALAAIFSQFTSHQQSLALEDYSVSQTTLDQVFVNFARHQQEEGESQGYNN
PVDTSDELSLMSLKTSQEAEKV
NT seq
6729 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacgcaattcactctgctcctgtggaagaacttcactctgcggaagaga
caaaaggtgcgactggtcgttgaggtgatatggcctctgtttctcttcttcatactggtg
tgggtgcgctcctccaataagccagttcacaaaggccaatgtcactacccaaataaagcc
atgccgtcagctggcgtgctgccttggctccaaggtatgatctgtaacatcgacaatccc
tgtttgagccacccaacgcctggggaaacaccagggcaggtcaacaacttcaacaactcc
ataattgctggaatgttgatagagctgcaaaccctcctggtgaacagatctattctcagg
aagacaaagttgttggcagatgacatcgaccagtgggcgtcagtcctttcgcagtctaac
cccggtaatgctcaaccagtgaccctaaggagtatcctacgagacaacgaaaccttctcc
acacaccttaaagagaatttgtcggtgccaccaacagttgttcaaagcctcctaaatgct
actgtcaatccaaccatgggcattccacaaccaggaactctcagggcgattctgtgtgag
gggacggatctggatgactatgtccaatttaacagccaagctgagaagaaggctttccaa
aatgtcagctgctccctcactcaacagcagctgattaacacccagcaagtactcctgcaa
aacctggatgtgaggaaagtgctttctaagctgcctttggatctgaatgcagcagaaacc
ttgacattgatgagggatacatctcgcaatgctgtaccagtgatcgaggagatggccaga
ctgcagaactccataatctttaaggctgctactacattggatttccaagaggacatgatt
ggcagtatcaatatgctactgtgtggaaagcagcctgacttcaattccaccaatatgacc
ctcagtttacaatcacccagacaaatggctaacaaccggtcaatctccactacgggcaac
agttctgatgctttttgtcagacccttgtggaaaccctggagagcacacctgttctgcgc
aacatttggagcactgtcaagccgttattgcaaggcaaagtcctctacacacctgatact
cctgctgctcgcctcatggtgaacaaagcaaatagcacattcaacgccttggccaagatt
aaagagatcactgatttgtgggatgaacttgggccccgtgtctgggattttcttcaaaat
agctctcaagtgaacacaatacgggctttactggcgaacccagtgtttgctgctcttctc
gaccagcgtctcaatggcacaggatggacggcccagcagctggccaacttcctgtacaat
gggcctcccgaggatcgtccacctggcacgccgccatatgactggcgggatgtttacaac
gccaccactcaaatcctgaagctactctccaccttccttggctgcttagacctgaataag
tttgtggcggttcccgatgaaacccagctggtgagcgaagcactggagctcctgaagaac
gatacgtactgggccagtgttgtcttcgaaaacctgcagccagactccagccagccccct
ccgtatctcaaatacaaaatccgcatggacgttgatgaagtagagcgtaccaacaaatta
aaagaaaggttatggtctcccggggcccgagacaaatcctttaacgacctgcgctatata
tggggaggcttcgcctacctgcaggatatgatggaccatggcattatagaggtgcaaacg
tcaaagacccaacccctcggtgtctttgcccagcagatgccatacccttgtttcgtggat
gacgtcttcgttcagagtattggaggcatcatccccatgttcctggtgctggccttcatg
tacacagtgtgcatgaccatcaaaggcctggtgctggagaaggaactccggctcaaggaa
gtgctgcgtgccgttggcattcaaaacggtgccctttgggcttcaaggttcacagagaac
attgttctgctcactgttccctgtttgctcataagtgtcatggttaagtatgggcaagtg
ctgcagtacagcgacccctcggtgatctttgtcttcctgctggtgttctgtttgaccacc
atcactcagtgcttcttcattagcgtcttcttctcgaaggccaacttagcagcggcgtgc
ggtggcctcatctactttgtcctctatctgccgcacatcctctgctatgcctggagggac
gtcatgggtttcggggccaaggttgctgtgagtttactgtcatgtgtggccttcggcttt
ggctgtgagagcttttctaagtacgaggagcaaggtatcggtattcagtggtacaacatc
aacaacagtccagaggagggggaacgctacaccttcttgctgtctatcataatgatgctg
tttgatgctgctttatactggacgctcacctggtacattgagaatgtctttccaggccag
tatggaatccctaagccatggtatttccctttcgctgcatcctattggtgtgggagagct
tcagtgaccgatgtcgaccctggttttctgaaggacaccagtgtacataatgaatacatg
gagaaaccaccacccaatatgaaggcagggatctcaatccgcaatcttgtcaaaatctac
aagactggaaagaagcttgctgtggacggactaactatggacttctatgaaaaccagatc
acatcttttcttggccacaacggagctgggaaaacaaccacaatgtcaattctgaccgga
cttttcccgcctacatcaggcacagccctcatcaatggatatgacatccacactgacatg
gacagcattaggaagtatttgggaatgtgcccgcagcacaatgtcttattcaatgagctg
acggtggaggagcacatctacttctacgctcggctgaaaggacacaactacgaggaggtg
aaaattgagatggaccagctgattagggatgttggtttaccacataaaaggaaggatctt
gccaagaacctgtcaggtggcatgcagaggaagctgtccgtggctatagcatttgttggc
ggctcaaaaatcgtcatcttagatgaacctacagccggagtggacccctatgcccgcagg
ggtatctgggaactgctgctaaagtacaaacaaggtcgcacaatcattttgtctacacac
cacatggacgaggcggacattttaggcgatcgcattgccatcatctcccacggcaagatg
cgttgctgtggctcctcactctttcttaagaaacgttttggcagtggctactacctcacc
ctggttcgagatgggactgaaaagatggcagctcagcgtaatggcattatacacagtcag
gccatagaggagaaagaccatcctttgagcagcagcccagatgacggcatcagcagccaa
aactggagcaactcagatccctcagatttgacagctgtgggtcaacttgtgcggcggaat
gtccctgaggcagtcttcttggagagcattggtcaagagatcacctacatcctgccctat
agtggagcccgagatgggacctttgctctgctgttccaagagcttgacctggccatggct
gacctcggcctgaccagctacggcatctctgacaccacactggaagagatatttcttaaa
gtggcagaagacactggagtggacacagaaatccaaacaacagaggagctgtttgtgaaa
gactgcaaaaaaagctcccgcaaatccaagcggaacagcatcgccagcatccgcgctcct
ccagaacaagtctctggaatgactgaattaaaaggaagatttacaagtaaagttaaagac
ttaaagaggaacaccaccgacagtgggaagggatccacggtcatcactgggtgggggctg
atcaggagacagttcctagcgctctttatcaagcgcttccaccacgcccgcaggagccgc
aagggactcattgcccaggtggtcttgcccgctgcttttgtgtgcctgtctctgttcttc
tcactcatcgtcccacctttctctgaatatccaagtctggagctgcagccctggatgtac
ggtctgcctcaaaccacattttacagcaatgacgggccaaataatgtggaggtgtcccag
gtggtggagaccttggtgaacaaccctggctttgggactcgctgcatgattgaaaacccg
ataccgaagttgccgtgttctcctactggttctgactggttcactccacccgtggatcag
tcagtcacggacatcttcctcaacgggaactggagcatgtctaacccctccccctcctgt
cagtgcagcacgcccaaacggaccatcatgttaccggactgtccacctggtgcgggaggg
ctccgtccaccacagaggatccagagcacaacagatacattgctggatttgactggacgc
aacatgactgacttcttagtcaagacttttgaacactcgggtaaaacaaggtttgggggt
atttccgtcggaggggtcaactcacaagtccgtctgactgaggaagaaatcgaggttgca
ttaagggatctaaaagacatattcagttcatttcaggataatgtcacagatcagctcttg
cagaagtctgagacgctgctgaagaagctgggaaccagggacaatgttaaggtgtggttc
tacaaccaggcatggcacggcatggtgtctttcctcggtgtggccaacaatgccatcctg
aggggaaatctacctgcgggaaagagtcccagtcagtacggcatctccgtgtccaatcac
cccctcaacctcaccaaggagcaactctccttcgtggccttggccacaagctctacggac
gtggtggtgtccatctgtgttatctttgccatgtccttcatccctgccagctttgtcctc
ttcctcatccaagagcgggtgaacaaagccaagcatctgcaatttgtcagcggagtaaac
ccggttgtgtactggctggccaattttgcctgggacatgtgtaactacatcataccatgc
ttgatcgtgatcgcaatcttcctcgccttccaacaaaaagcttatgtgtcaccttctaac
ctgcctgccctgattctgctgctcattttctatgggtggtccatcacccccatgatgtac
cccgcctccttcatcttcagtgttcccagcacagcatacgtggtgttgacctgcatcaac
ctcttcatcggtatcaacggcagcattgccactttttttatggagctctataatgatgat
aaagtcgctcgaataaacgacatagtgaagcaggtgctgcttatattcccacatgtctgt
ctgggcagagggctaattgacatggccaagaatcaggcaatggccaccatcttcagcagt
tttggggaagaccgtttcgtggatccactcagctgggaaatggtgggaaagaatctttgc
gccatgtccatccagggagctgtcatgtttgtcatcacaatcctcatccagtataagttc
ttctgcaaaccaaggcttatttcggggaagtcatctgcagaggaagaggatgtcgatgtt
gctcgggaacgggaacgagtgtatgaaggcaaagccctgaatgaccttctgagaatctgt
gacctcactaaggtataccctcggaagagcgcccctgctgtggacaggctatgtgtgggt
gtacctgctgcagagtgtttcggcttgctgggaatcaatggggctgggaaaactaccaca
ttcaagatgctgacaggagatatcccggtctctggtggagaggccttcctaaacggatac
agcatacgaacagaaatgagggatgtgcaccagaacttgggctattgtccccagtttgac
gctatcaatgacctgctaactggacgagaacatctggagttttacgcaaggttacgagga
gtaccagagcatgagatcaccatggtggccgagtgggggatccagaagttggggctggtc
aaatattcaaacaaatctgcaggaacctacagcggtgggaacaaacgcaaactctcaact
gctatagccctgattggttgtcctccagtgatctttctggatgagccaactactgggatg
gaccccaaggcccggcgcttcttgtgggactgcatcctaagtgtcatcaaagagggccgc
tcagtcattctcacatcacacagtatggaggagtgtgaagcactgtgcacacgcatggcc
atcatggtaaacggtcgcttcaagtgtctcgggagcatccagcatctgaagagcagattt
ggtgacggctacacagtgatcgtgagggttggtgactctcctcttgccttgaagccagtc
gaggactttgtccagcagaccttcccaggcagtgtcctgaaggagaagcatcacaacaca
ctgcagtatcagctgccatacacacagggggctttggccgccatcttcagccagttcacc
agccatcagcagtcgctggctctggaggactactctgtgtcacagaccactctggatcag
gtctttgtgaattttgcgaggcaccagcaggaggaaggggaatctcagggctacaacaac
cccgtggacacttcagatgagctgtcgctgatgtcgttgaagacctcccaagaagcagag
aaggtgtaa
DBGET
integrated database retrieval system
