Scophthalmus maximus (turbot): 118317851
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Entry
118317851 CDS
T09850
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04010
MAPK signaling pathway
smau04020
Calcium signaling pathway
smau04144
Endocytosis
smau04510
Focal adhesion
smau04540
Gap junction
smau04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118317851 (pdgfra)
04020 Calcium signaling pathway
118317851 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118317851 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
118317851 (pdgfra)
04540 Gap junction
118317851 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
118317851 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smau01001
]
118317851 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
smau04090
]
118317851 (pdgfra)
Enzymes [BR:
smau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
118317851 (pdgfra)
Protein kinases [BR:
smau01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
118317851 (pdgfra)
CD molecules [BR:
smau04090
]
Proteins
118317851 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
C2-set_2
Motif
Other DBs
NCBI-GeneID:
118317851
NCBI-ProteinID:
XP_035502792
LinkDB
All DBs
Position
13:complement(18853206..18870639)
Genome browser
AA seq
1472 aa
AA seq
DB search
MDGLRTYVVCGGILVLLVSVTCGLSPPTIVSNEEEFVLQPNSVFNISCTGKRNVVWAEPL
PANTFVYPGYYTATLFIYNATVENTGYYMCVYETQEAELEGGEEEYNEAGIYVFVPDPTA
PFVPETPDNLEVAMDTTGVAISCRVSDPSSDVILRSVPSGEEMPAYYDNKMGFFGNLSPG
QYRCETTLRGQTFRSAVYTVKVEAPAEMEDFNLEVKASEENLRAGQPFSITCIAPAGLGF
HQQWLHPKKQATDAVQMKESFPDRVTYTLFILKATAQDSGTYECSITHEISGDVRVSSVA
VTVFEENSFLVLDHSGILAVEFVSLLEETEFTILIDAHPAPKVTWLKDGKDMLGNYYVLT
KTSHLEGNRYQSILTLRQPMEKDNGNYTITALSGSRTAQFSFNLKVKAPTTMMFPPSSAP
VLLPQIDEMVVPLHTPFTLTCRGEAKLAWETPLDVVELTQEDNSGLFVTTITVNTATALH
TGYYTCFYSRNTTEETEDSSIYIYVPDPNVPFVPSPVPFGNHVLSDHEEMEIQCRVSDPT
ANVTLVNVDTQQPVPSVYDSKRGALGVFTAGTYVCKALIKGEEHYSGEYIVHGWTGGAAL
HVELTAKRTALLVGETITVTCLARGSEILEDHWKYPGKLANRGIKAVHENKRDQEILYTL
TIPQATTKDSGIYSCSITDIISNESQTKQLSIRVFASEFLSIWPQFGEYESAELDEVKEF
SAKINSFPNAHVTWLKDGTPLSDVTAEIFPSLRKISETSYMSVLTLIRAKEEDSGNYTMR
VQNGNQSQHVGLVLEVKVPAVIVELMDIHHGSATGQSVVCIARGQPTPVVEWFICKNIKH
CANDSSSWVPLPTNSTKITVDSHMDEDNNLESQVMFGHLENTLAVRCLAKNEMAAVSREV
KLVSNGPHPELTVAAAVLVLLVIVIISLIVLVVVWKQKPRYEIRWRVIESVSPDGHEYIY
VDPMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR
SSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRENFL
SLNPEKTKKELDIFGINPADESSRSSYVILSFESKGDYMDMKQADNTQYVPMLEMNNASK
YSDIQSSNYDHPPSQKGSSEGELDDLLSEDMNEGLSTTDLLSFTYQVAKGMEFLASKNCV
HRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTSL
SDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMSKPEHAPHDVYEMMMKCWNS
EPEKRPSFLGLSETVSSLLPSSYKRHYARVNHDFLKSDHPAVTRVCIESDDAYIGITYKN
QGKLKDRESGFDEQRLSSDSGYIIPLPDLDPISDDEYGKRNRHSSQTSEESAIETGSSTS
TFAKREGETLEDITLLDEMCLDCSDLVEDSFL
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atggatgggctgaggacgtatgtcgtctgtgggggcattttggtgctgctggtttcagtc
acctgcggactgtcgccaccgaccatcgtgtccaacgaggaggagttcgtcctgcagccc
aactccgtgttcaacatcagctgcacggggaaaaggaacgtggtgtgggccgaacccctg
ccagcgaacacctttgtgtacccgggctactacacggcaacgctcttcatctacaacgcc
acggtggaaaacaccggctactacatgtgcgtgtatgaaacccaggaggccgaactggag
ggtggagaggaggaatacaacgaggcggggatatacgtgtttgtgccagatccgacggcc
ccgtttgtccccgagacccccgacaacctggaagtcgccatggacacgaccggggtggcc
atctcatgccgtgtgtctgacccttcctcggacgtcatcctgaggagtgtccccagcggg
gaggagatgcccgcctactacgacaacaagatgggcttcttcgggaacctctctcccggg
cagtaccggtgtgaaaccaccctgaggggccagacgtttcgaagtgcagtttatactgtg
aaagtggaggcccccgcagagatggaggatttcaacctggaggtaaaagccagcgaggaa
aacctgagagccgggcagccgttcagcatcacctgcatcgcacccgctggcctgggtttc
caccagcagtggctccatcctaaaaaacaggctacggatgcagttcagatgaaagagtct
tttcccgaccgggtcacctacaccctctttatcctcaaagccaccgctcaggacagtggc
acctacgagtgctccatcacgcacgaaatcagcggagacgtcagagtcagcagcgtggcc
gtcaccgtcttcgaggagaattcctttctggtgctggaccacagtgggatcctcgcggtg
gagtttgtgagccttttggaggagacagagtttaccattctcattgatgcccaccctgcc
cccaaagtgacgtggctgaaagacggaaaagacatgctggggaactactatgtcctcacc
aaaacaagccaccttgaagggaatcggtatcaaagcattctgacattacggcagcctatg
gagaaggacaacgggaactacaccattacagccctgagcggctctcgcactgctcagttc
tctttcaacctcaaagtaaaagcccccaccacaatgatgttcccaccctcctcagcccct
gtgctgctgccacagatagacgagatggtggtgcccctccacactcctttcaccttgacg
tgccgcggggaggcgaagctggcctgggagacgccgctcgacgtggtggagctgacgcag
gaggacaacagcggcctgtttgtcaccaccatcaccgtgaatacggccaccgcactgcac
accggctactacacgtgtttctacagcaggaacaccactgaggagacggaggacagcagc
atctatatctatgtgccagatcccaatgtccccttcgtgccgtcgccggtgccgttcggt
aaccacgtcctgtccgaccacgaggagatggagatccagtgccgggtgtctgatcccaca
gccaacgtgaccctggttaatgttgacacccagcagcctgtgcccagcgtgtatgacagc
aagaggggtgcgctgggggttttcactgctggaacctacgtttgtaaggccctcataaaa
ggagaagaacactacagcggggaatacatcgtccacggctggacaggtggtgctgcgctg
cacgtcgagctgacggccaagcgcactgctctcctggtgggtgaaaccatcacggtcacc
tgtctggctcggggatcggagattctggaagaccactggaaataccctggcaaactggct
aatcgtggaatcaaagcggtgcatgagaacaagagggatcaggagatcctctacaccctg
acgatcccacaggctacaaccaaagacagcggcatctactcttgctccatcaccgacatc
attagtaatgagagccagacaaagcaactatctattagagtttttgcaagcgagtttttg
tccatctggccacagtttggagagtatgaatcagcagagctggatgaggtcaaggagttc
agcgccaagatcaactccttccccaacgctcacgtcacgtggctcaaagacggcaccccg
ctcagcgatgtgacggccgagattttccccagcctccggaagatcagcgagaccagctac
atgagtgttctcaccctgatccgggccaaagaggaggacagcggcaactacaccatgcga
gtgcagaatgggaaccagagtcagcacgttggcttagtcctggaggtcaaagtacctgca
gtcattgtggagctgatggacatccaccacggctcagccacgggccagtctgtggtgtgt
attgccagagggcagcccactcctgtggtggagtggttcatctgtaagaacatcaaacat
tgtgccaacgactcctcctcctgggtgcccctccccaccaactccaccaagatcaccgtg
gactcccacatggacgaggacaacaacctggagagccaggtcatgttcggccacctggag
aacacactggcagtccgctgcctggccaagaacgaaatggccgccgtcagcagggaggtc
aaactggtgtctaatggccctcaccccgagctgactgtagccgccgccgtgctggtgctc
ctggtcattgtcatcatctcactcattgtcttggttgttgtctggaaacagaaaccgcga
tatgagatccgctggagggtcattgagtccgtgagcccagacggccacgagtacatctac
gtggatcccatgcagcttccctacgactccagatgggagtttccccgtgacagactcgtg
ctcggtcgtatcctgggctctggagcctttgggaaggtggtggagggcacggcctacgga
ctgagccgctcccagcctgtcatgaaggtggcagtgaagatgctgaaacccacggcacgc
tccagcgagaaacaagccctgatgtcagaactgaagattatgactcatcttggacctcat
ctcaacattgttaacctcctgggagcatgcaccaagtcaggccccatctacatcatcaca
gagtactgcttctacggggacctggtcaactacctgcacaagaacagggagaatttcctg
agcctcaacccagagaaaactaaaaaagagctggacatctttggaatcaaccccgcagat
gagagcagcaggagcagttatgtgatcctgtcattcgagagcaaaggagactacatggac
atgaagcaggctgacaacactcagtatgtgcccatgctggagatgaacaatgcctccaag
tactcagacatccagtcatccaactacgaccatccaccctcgcagaaaggctcaagtgag
ggcgagctggacgacctgttgtcagaggacatgaacgagggcctcagcaccaccgacctg
ctcagcttcacctaccaggtggccaagggaatggaattcctcgcctccaaaaattgcgtg
catcgggacctcgcagccaggaatgtcctcctctcccagggcaagatagtgaagatctgt
gactttggacttgccagagacatcatgcatgacaacaactatgtctccaaagggagcaca
ttcctgcctgtgaagtggatggcaccagagagtatttttgacaacctttacacttccctc
agcgatgtttggtcctacggcatcctcctctgggagatattctccttaggtggcacccca
tacccggggatggtcgtggactcaagcttctacaacaagatcaagagtggatacaggatg
tccaagcccgaacatgcacctcatgacgtatatgaaatgatgatgaagtgctggaacagc
gagccagagaagaggccttcgttcctgggtctgagtgaaactgtctcttctttgctgccc
tccagctacaagaggcattatgcgagggtaaaccacgacttcctgaagagcgaccacccc
gctgtgactcgggtgtgcattgaaagtgacgacgcctacatcggcatcacctacaagaac
cagggcaagctgaaggacagggaaagcggctttgacgagcagcggctgagctccgacagc
ggctacattattcccctccccgacctggaccctatatctgatgatgaatatggaaagagg
aacagacacagctctcagacatccgaggagagcgccatcgagaccggctccagcacatct
acttttgcgaagcgcgagggcgagaccctggaggacatcacgctgctggacgagatgtgt
ctggactgtagtgacctagtagaggacagctttctgtga
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