Scophthalmus maximus (turbot): 118318663
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Entry
118318663 CDS
T09850
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04136
Autophagy - other
smau04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118318663 (atg4b)
04136 Autophagy - other
118318663 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
smau01002
]
118318663 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smau04131
]
118318663 (atg4b)
03029 Mitochondrial biogenesis [BR:
smau03029
]
118318663 (atg4b)
Peptidases and inhibitors [BR:
smau01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
118318663 (atg4b)
Membrane trafficking [BR:
smau04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
118318663 (atg4b)
Mitochondrial biogenesis [BR:
smau03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
118318663 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Dysbindin
Motif
Other DBs
NCBI-GeneID:
118318663
NCBI-ProteinID:
XP_035504411
LinkDB
All DBs
Position
13:complement(21017153..21024830)
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AA seq
399 aa
AA seq
DB search
MDAATLTYDTLRFGEFEDFPETSEPVWVLGKEYNALTEKDEILSDVTSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALLCRHLGRDWRWAGGQKQREEYISILNAFIDKKD
SYYSLHQIAQMGVGEGKPIGQWYGPNTVAQVLKKLAVFDTWSRLVVHVAMDNTVVIEEIK
RLCMPWLDAAGACGGAEGQGELNGCLEGACAMAEEETALWKPLVLLIPLRLGLSDINEAY
IETLKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPCEDSQVPDETY
HCQHPPCRMHICELDPSIAAGFFCRTEDEFDDWCMRIRRLSCKRGGLPMFELVDSQPSHM
VSVDALNLTPDVPFTDFSDSDRLERFFDSEDEEFEILSL
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagctaccttgacatatgacacacttcgctttggagagtttgaagatttccct
gagacctcggagcctgtgtgggtcttaggcaaagaatacaatgcgctcacagagaaagat
gagattctatcagatgtcacttcacgactgtggttcacatacagaaaaaacttcccaccg
attggtgggacaggcccaacatcagatacgggatggggttgtatgttacgatgtggccag
atgattctaggcgaggccttgttgtgtagacatttaggcagagactggagatgggccgga
ggccagaaacaaagagaagagtacatcagtattctcaacgccttcattgacaaaaaggac
agctattattctctccatcaaattgcccaaatgggagttggagagggaaaacctatcggc
cagtggtacggaccaaacacagtcgcccaggttctaaagaagctggcggtgtttgataca
tggagcagattagttgtacacgtggcgatggacaacaccgtggtcatcgaggagatcaag
cgtctctgcatgccctggctggatgcggcaggagcctgtgggggagcagaggggcagggg
gagctgaacggctgcctcgagggtgcctgtgccatggccgaggaggaaacggctctctgg
aagcctctggtactgcttatccccctcaggctgggtctgagcgacataaatgaggcctac
atcgaaaccctcaagcaatgcttcatgctgcctcagtccctgggcgttattggggggaaa
cccaacagtgcccattacttcattggttatgtcggagaggaactcatctatttagaccca
cacaccacacagcctgcagtggagccgtgcgaggacagccaggtccccgatgagacgtac
cattgtcagcacccaccctgtcgcatgcacatctgtgaactggacccgtccatcgccgcg
ggtttcttctgcagaacagaggacgagtttgacgactggtgtatgcgcataagaaggctg
tcctgcaaaagagggggcctgccaatgtttgagctcgtagacagtcagccctctcacatg
gtcagtgtggatgccctgaacctcacgcctgacgttcccttcacagacttctcagactcg
gaccggttggagcggttctttgattcagaagacgaggagtttgagatcctttccctgtga
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