Scophthalmus maximus (turbot): 118318984
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Entry
118318984 CDS
T09850
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03008
Ribosome biogenesis in eukaryotes
smau03013
Nucleocytoplasmic transport
smau03015
mRNA surveillance pathway
smau05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118318984 (nxf1a)
03015 mRNA surveillance pathway
118318984 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
118318984 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118318984 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118318984 (nxf1a)
03009 Ribosome biogenesis [BR:
smau03009
]
118318984 (nxf1a)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118318984 (nxf1a)
mRNA cycle factors
Stress granule specific factors
118318984 (nxf1a)
Ribosome biogenesis [BR:
smau03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
118318984 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
118318984
NCBI-ProteinID:
XP_035504896
LinkDB
All DBs
Position
9:15391207..15403245
Genome browser
AA seq
669 aa
AA seq
DB search
MDHGALSQRSYPNLVVTRVLDNDREDLMVRREVRRTDLTVLGEHDDRTAPQQFRSRKGRG
AHKGRSYDRSRRDRQRGNHQGGFGGPGPRGRLDDIDGDVTMSDNPQDNSSQHRFNPYGRK
GDGRFDRDRRHGKGGGGGRGGGGGFRGGNRGGGSGGGGGGGKNQSGWSKVTIPHGRKYDK
KWLMTALEKICSVPFTPVQFHVDHDRAHFYVYDTSAAIALRKCSHKITDTDGYKVEVHVN
PHAPPSFLLADLKPEHLEHLKQCMAKRFDGSQQALDLNNIRTDPDLVSHKIEVTLNRKTH
MEAVITIIEENIPELTCLNLSNNRIHKLDELSELVAKVPNLKTLNLSHNELKSDRELDKV
KGLKLVELWLNRNPLCLYFKDQASYISAVRQRFPRLLKLDGNDLPPPIGFDVETPTTIPP
CKGSCFGSDEIKAVILRFLQQYYSIYDSGDRQPLLDAYHDGASLSLTTPYSTQNPSRSSL
GEYHKDTRNLKRIKDTTMRFRLLKHTRLNVVAFINELPKTQHDIASFTVDVNTYTNTLLS
FTVSGVFKEVAVDGKSRDSTMAFSRVFVTVPAGGSGLCIVNDQLFIRMATTEEIRRAFVA
PAPTPSSSPVPTLTAPQQEMLTAFSLKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKTDG
HIPDVAFIK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaccacggggctttgtctcagagaagttaccccaacctggtggttacacgtgtgctg
gacaacgaccgcgaggacttgatggtgaggagagaggtcagaaggactgatctcacggtc
ctaggagagcatgatgacaggaccgcgccacaacagtttcgtagccgcaaaggcagaggc
gcccacaagggtcggtcatatgacaggtctcgcagagaccgccagcgggggaaccaccaa
ggtggctttggaggtcctgggccacggggcaggcttgatgatattgatggagatgtaaca
atgagtgataaccctcaggacaacagctcccagcacagattcaacccatatggaagaaaa
ggagatgggaggtttgaccgagacaggcgacatggaaaagggggaggcggtggtagaggt
ggaggtggtggcttcagaggaggcaacagaggtggagggagcggtggaggaggaggaggc
gggaaaaaccagtcaggctggtccaaagtaacaataccacatggaagaaaatatgacaag
aaatggttaatgacagctcttgagaaaatctgttcagtgcccttcacccctgtacagttc
catgttgatcacgacagggctcatttctacgtgtatgatacctctgctgccattgcttta
cgcaaatgttctcacaagatcacagacacagatggttataaggtggaggtgcatgtcaac
ccccacgctccaccctccttcctcctcgctgatctaaagccggaacacttggagcacctg
aagcaatgcatggcaaaacgttttgatggctcccagcaagcacttgacctaaacaacatc
cggacagacccagacttggtgtcccacaaaattgaagtcactttgaatcggaagacacac
atggaagctgtcattacgattattgaagaaaacattccagagctgacttgcttgaacctg
agcaacaaccgtattcacaaactggatgaactctctgaactggttgccaaggtgcctaat
ctgaagactctcaacctttcccacaacgagctgaagtcagaccgggaactggacaaggtg
aaaggcctgaagctggtggagctgtggctgaacaggaaccctctgtgtctttacttcaag
gaccaggcctcctacatcagtgctgtgcggcaaaggtttccccggcttctcaaactggac
ggtaatgatctccccccacccattggatttgatgtggaaacacccaccactatccctccg
tgcaagggcagctgttttggctcagatgaaatcaaggctgtcatccttcgcttcttgcaa
cagtactacagcatatatgactctggggacagacagccacttctggatgcttaccatgat
ggagcatcattgtccctcacaacaccttactccacccagaacccctccaggagcagcctg
ggagagtatcacaaagacactcgaaacctaaaaaggatcaaagatacaacgatgagattt
cgattactcaagcacacacgactgaacgtggtggctttcatcaacgagttgcccaaaact
cagcacgacattgcctcatttactgttgacgtaaacacctacacaaacacactactgtca
ttcaccgtgagtggtgtcttcaaagaagttgctgttgatggtaaatcccgagactccaca
atggccttctctcgagttttcgtcacagtcccagcagggggttctggtttgtgcatcgta
aacgaccagcttttcatccgaatggccactacagaggagatccgcagagcctttgtggct
cctgcccctactccatcttccagccccgtccccaccctcaccgcaccacagcaggagatg
ctgacagccttctcactgaagtctggaatgaacctggaatggtcccaaaagtgtcttcaa
gataatgaatgggatttcaacagagcggctcaaatcttcactcagttaaagacggatggc
catatccctgatgttgcgttcataaaatga
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