Scophthalmus maximus (turbot): 118319096
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Entry
118319096 CDS
T09850
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118319096
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118319096
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118319096
NCBI-ProteinID:
XP_035505080
LinkDB
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Position
9:complement(11829563..11940623)
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AA seq
625 aa
AA seq
DB search
MDTASDSVGESKPVCQCAPKSAVRRWLPGFPIALCLLMSLSSITVCLLMSLKTFQLENRL
QMEMDKASVFSPPHGAFLKEDGTLIPELSRSIGKLVEEKVVVLMPKMRTARDVGQQECSC
PPGPPGKRGRMGRRGEPGPPGKAGRDGYPGPLGLDGKPGLPGPKGSQGPAGPKGEKGDQG
DIGPRMVFPRYDHGFLSGEQSNSFQRRFLKGDQGQAGPAGPPGPPGPPGPRGPPGNTGKD
GPRGPAGEPGFPGRDGIEGAQGSPGKPGEDGEPGYPGSQGPPGVKGEPGTGEKGERGMDG
LPGLKGDKGEIGEQGAQGPMGYQGEKGNKGSSDIIDFNGKLLDAFQAINTISVSGPPGPP
GPPGLQGEKGELGLPGPAGVDGEKGPKGDIGVTGQPGERGEKGEMGLSGPAGMDGQKGEK
GGSRLDDNLVQMISQPGPPGPPGPPGVPGSPGSTGLHGMPGPKGEPGAGMRGEKGETGAP
GFRGQDGHQGPPGSAGLVGLPGAKGEKGRPGEPGLDGFPGLRGDKGDRGERGEKGDRGSV
GKRGLKGQKGEQGPPGLDQPCPVGCNQTKGLSVEAELSSLPAPPLPPSGPEAPCPVGHDG
MPIPGCWHKEDMSRQKLKRKRLSQP
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggatacagccagcgactccgtcggggagagtaagccggtgtgtcagtgtgcccccaag
tctgcggtccggcggtggttgccaggtttccccatcgccttgtgcctgctcatgtcgctg
agctccatcaccgtgtgtctcctgatgagcctcaagaccttccagctggagaaccgactg
cagatggagatggacaaagcatccgtcttcagcccgccgcacggggcttttctaaaggag
gacgggaccctgatcccggagctgagtcggtcaatagggaagctcgtggaagagaaagtg
gtggtgctgatgccaaaaatgaggacagcgagggatgttggacagcaagagtgctcctgc
cctccagggcctccgggaaagcgtggaaggatgggaagaagaggggaacctggacctcca
ggcaaggctggacgggatggatacccgggtccacttggcttggacggaaaaccaggttta
ccgggtcctaaaggaagccagggaccagccggccccaagggagaaaagggtgaccaagga
gacattgggccacggatggtttttccccgatatgaccatggctttctctctggagagcag
tccaacagctttcagagacgctttctgaagggtgaccagggccaggctggacctgctggt
cctcccggtcccccaggtcctcctggtccccgagggccccctggaaacacaggcaaggat
gggccccgtggtcctgctggagagccgggttttccaggccgtgatggcattgagggagca
cagggatcacctgggaagccgggagaagacggtgagcccggctatccagggtcacagggt
cctccaggggtaaagggcgagccaggtacaggggaaaagggagagagaggcatggatgga
ctcccaggattaaagggtgacaagggggaaataggagagcaaggagcacagggacccatg
ggttatcaaggtgaaaagggcaacaaaggatcctcagacatcattgacttcaatgggaag
cttctggatgctttccaggcgatcaacaccatcagtgtttcgggcccacctggaccacct
ggacccccaggccttcagggggaaaagggtgagctcggtttacccggtcccgcaggagtt
gatggggagaagggacctaaaggtgacataggcgtgacaggacaacccggcgagagaggg
gagaagggagagatgggtctctctgggcctgcgggtatggacggacagaaaggagagaaa
ggtggcagcagactggatgacaacctggttcagatgatttcccaaccgggcccacccggc
ccacctggcccaccaggagttcctgggtcccctggatccacggggctgcatgggatgcct
ggccctaagggtgagcctggagccgggatgaggggagagaagggggaaactggtgcgcct
ggattcaggggacaagatgggcaccagggtccacctgggtctgcagggttggtgggactt
ccaggtgcaaagggagaaaaaggcagaccaggcgagcctggactagatggtttcccaggt
ctgaggggagataaaggtgaccgaggagaaagaggagagaagggtgacaggggatcggtg
ggaaagagaggtctgaagggccagaagggagagcagggtcctccgggcttggaccagcct
tgtcctgtgggctgtaatcagaccaaaggtctgtctgtggaggccgagctttcttccctt
ccagctcctcctcttcctccttccggccctgaggccccctgtcctgtgggacacgatggg
atgcccataccaggctgctggcacaaggaggacatgtcgaggcagaagctcaaacgcaag
cgtctctctcagccctga
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