Scophthalmus maximus (turbot): 118319107
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Entry
118319107 CDS
T09850
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
118319107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smau03041
]
118319107
Enzymes [BR:
smau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118319107
Spliceosome [BR:
smau03041
]
Complex C
Other components
Complex C specific factors
118319107
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
Utp25_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118319107
NCBI-ProteinID:
XP_035505103
UniProt:
A0A8D3A323
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All DBs
Position
9:complement(10268513..10273861)
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AA seq
614 aa
AA seq
DB search
METESRPKKRDHGEDERSGSEGSEDDDYVPYVPVKIRKHQMLQKMLRLRGKAVDEDLKDN
GEEQRDEDEGLGPRSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMS
VKEMAKGIIYDDPIKTSWKAPRYILNMPATRNERVRKKFHILVDGDGIPPPIKSFREMKL
PPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPIIMFSLEQEK
RLPFFKREGPYGLIICPSRELARQTHSIIEYYCKLLEEEGAPQLRTALCIGGMSVKDQME
VVKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQ
RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECL
QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVA
TDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLMDL
KALLVEAKQKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTN
IGRKDYLAHSSMDF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagacggaaagtcgacccaaaaagagagaccatggggaggatgaacggtctggctca
gaaggatcagaggatgacgattatgttccatacgttccagtcaaaataagaaaacaccaa
atgctgcagaaaatgttacgtctgcgaggaaaggcggtggacgaggacttgaaggacaat
ggggaggagcagagggacgaggacgaaggtctcggtccgcgctccaacgtcagtctgctc
gatcagcatcagcacctcaaagaaaaagccgaagcccgaaaggagtcagccaaggagaag
cagctgaaagaggaggagaagattcttgagagtgttgcagagggcagagctctgatgtct
gtgaaggaaatggctaaaggtatcatatatgatgatccgataaaaactagctggaaagca
ccacgctacatcctgaatatgccagccacccgaaacgagcgcgtcaggaagaagtttcac
atcctggtcgacggagatggtatccctcctccaatcaaaagcttcagggagatgaagctt
ccaccagctattctaaagggtttgaaaaagaagggtattgtgcaccccacaccgattcaa
atccaaggaatccccacagttctgtcaggtcgggacatgattggcattgctttcactgga
tcaggaaagactttggtcttcaccctgcccatcatcatgttttccctggaacaggagaaa
aggctgcctttctttaagagagaggggccttatggacttatcatctgtccttcacgagag
ttggcgaggcagacgcacagcatcatcgagtattactgcaaactgctggaagaggaggga
gcgcctcagctgcgcactgcgctctgcatcggaggaatgtctgtcaaggatcagatggag
gtggtcaaacatggtgtccacatgatggttgccacccctggcagactaatggacctgctg
cagaagaagatggtgagtctggacatctgccgctacttggctctggatgaggctgacagg
atgattgacatgggcttcgaggaagacatcaggaccatcttctcctatttcaagggacaa
aggcaaaccctgcttttcagtgccacgatgcccaagaagatccagaactttgcaaagagt
gcgctagtgaaacccatcactattaacgtgggtcgggctggcgctgccagcttggatgtc
atccaggaagtagaatatgtcaaagaagaagccaagatggtgtacctgctagagtgcctg
cagaaaacaccacctcctgtgctcatatttgctgagaagaaggccgatgtagatgccatc
catgagtatctgctgcttaaaggagtggaggcggtggccatccatggaggcaaagatcaa
gaggaaagaacaaaagccatagaggcattcaaagaaggaaagaaagatgtcttagttgcc
acagacgttgcctccaaaggtctggatttccctgccatacagcatgtggtgaactacgac
atgcctgaggagattgaaaattatgtccacagaattggaagaactgggcgatcgggcaag
accggtattgccaccacattcatcaacaaaggctgcgatgagtctgtattgatggacctg
aaagccctgctagttgaagccaagcagaaggttccgccagtcctccaggttctccagacg
ggagacgagaccatgctggacatcggaggagaaaggggctgtactttctgcggaggtctt
ggccatcgtatcacagactgtccaaagttggaggccatgcagaccaagcaggtcaccaac
atcgggcggaaagactacctggctcatagctcaatggacttctaa
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