Scophthalmus maximus (turbot): 118319211
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Entry
118319211 CDS
T09850
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118319211 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118319211 (polr1a)
Enzymes [BR:
smau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118319211 (polr1a)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
118319211 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
CDC45
Motif
Other DBs
NCBI-GeneID:
118319211
NCBI-ProteinID:
XP_035505304
LinkDB
All DBs
Position
9:complement(5530334..5553607)
Genome browser
AA seq
1675 aa
AA seq
DB search
MLFGKDVPWRRLEGMSFGMYSAEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNACPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLACHMLSCPRAAIHLL
LNQLKLVDHGAMQEVYQIENVLNQYLEENNKASGDEIEKVLSEFTDTILGVNTEASGITK
PIKHLVEKKNSLINDFWTIHMKTRKCPLCSSGRSCVRREHNSKLIVTMPTGVQNSDKTDD
LIAGKRVYMTASTAREHITQLWENEGFFLKCLFSGLEESTMSKEKCSYPDLFFLELLVVP
PCRYRPINRMGDQMFTNGQTVNMQAVMKDSVIIRKLLALIAGEKIIQEEEAVEQSDQTFL
SGIPGKTLTDKLYNIWIRLQAHVNIVFDSDMDKLMTDKYPGIRQILEKKDGLFRKHMMGK
RVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNIHPGAS
MVINEDGRKTILSATSLAQREAVAKQLLTPCPGPHKIPVKIVSRHIKNGDVLLLNRQPTL
HRPSIQAHNARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTDQ
QYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVYRGLTDKPGRVKLLPPAIL
RPQQLWTGKQVVSTLLLNVIPEKAVPLNLVGKSKIPSKAWIQVPPRAAPGYRPDSMCDSQ
VLIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGQTSGKLLSCLARLFTAYLQLYRGFT
LGVEDILVKPGANKRRKKIIQESLHIGTKALKAAFNLPANMDQAEAQGRWQDAHLNPDQR
DFSMADHKFKEVASQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVNTMQISCLL
GQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLV
DTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPRQ
FHFIEDNYEVIQRSQGLDKIMARLDPQAASQHFAAIQRWNAKREVACPRRGAFLLFSQKK
LAKLKQTTLELANQWYSLDEASRSKYSRKTSRCPEPSLSSLRPDVCFGSVSENFHGISEK
YLQDRGATGQDRVDTHSLRQLLLYKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFA
GRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKALKRAKTLRKKLTRVCLAEVL
QKLDVVESLQVENHQKQRRFKVAFHFLSPDRYCEDKLLTPQQILYYMETRFFRLLLEAIK
KRSAKLASIAVETRKATPRDKDNDGDGEADTAGLDDGDGEEREIVDDQGNEGDADASDAK
RKGKQEEEVDYDSEEEEGGDDDSEDKDDAAQEEVEKREETIQEDSQTEFAVVRPEKKKRK
QAKGGAGEEETMSQMRVNAVLQSHPAIERYCYDHQHELWCEVDLLLPVSKVHFDLTSVLS
TLAQNAVIVETKGLTRCLLSEATTKAGEKETVLNTEGINMHELFKHSDILDINRLYSNEV
HAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAIRSN
SSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVKGGTGLFELKQPLQ
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcgggaaagatgtgccgtggcggcgtttggagggcatgtcgtttggcatgtac
tccgccgaagagatacggaagctgagcgtgaagacgatcaccaacttcaggttcctcgat
gcagttgggaacgtggccccaaacagcctctacgacctggccctgggaccagcagacagc
aaagaggtgtgttcgacctgctgtcaggacttcaacgcgtgtccgggacacctgggacac
gtggagctgcctctgcctgtgtacaacccgctgttctttgataaactctacctgctgata
cgcggttcctgtctggcgtgtcacatgctgtcgtgtccccgagcagccatccacctgctg
ctgaaccagctgaagttggtggaccatggagccatgcaggaggtctaccagatcgagaat
gttctcaaccagtacctggaggagaataacaaagcctctggagatgagattgagaaggtg
ctgtcggagtttacagacacaatacttggagtgaacacggaagcctctgggatcaccaaa
ccaattaaacaccttgttgaaaagaagaacagtctgataaatgacttctggactatccac
atgaaaacaaggaaatgtccgctgtgcagtagtggcaggtcttgcgtgcgtcgtgagcac
aacagcaagctgattgtcacaatgccgacaggagtacagaacagcgacaaaactgatgat
ctgatagctggtaagagagtctacatgaccgccagtacggcccgggaacacatcacccag
ctgtgggagaatgaaggtttcttcctgaagtgtctgttctctgggctggaggagtccacg
atgtcaaaggagaaatgttcctaccctgacctcttcttcctggagctgctggtggtccca
ccttgcaggtatcgtccaatcaatcgaatgggtgaccagatgtttactaacggacagacg
gtcaacatgcaggctgtcatgaaggactctgtaatcataaggaaacttctggctctcatt
gccggggagaaaatcattcaggaagaagaggctgttgaacagagtgaccagacgtttctg
tcggggatcccggggaagacattgacggataagctctacaacatctggatccgactacag
gcccatgtcaacattgtctttgacagtgacatggacaaattgatgacagataaataccct
ggaatcagacagatcttggagaagaaggatggattgttccggaaacatatgatgggcaag
cgagtggactacgctgcacgatctgtcatctgtccagacatgtacatagggaccaacgag
ataggaatacctatggtgtttgccaccaagctgacctaccctcagcccgtcactccgtgg
aacgtgaaggagcttcgccaggccgtcctcaacgggcctaacatccaccccggcgcttcc
atggtgataaacgaggatggcaggaaaaccatcctatcagccaccagtcttgcacagaga
gaagcggttgccaagcagctgctgacaccctgtcctggtccacataagataccagtgaag
atagtgagtcgccatataaagaacggcgacgttttgttactcaacagacaaccaactctg
cacagaccctccatacaagcccacaatgcccgcatccttccaggagagaaggtattaagg
ctccactatgccaactgcaaggcgtacaatgctgactttgatggagacgagatgaatgcc
cacttccctcagagtgagctgggcagagcagaggcctacacgctggtcagcactgaccag
cagtacctcgtccccaaggatggtaaacctttagcaggtctgatccaggaccacatggtg
tcaggaacgaggatgacgatacgtggctgtttcttcagccgagaccagtacaccgagttg
gtgtacagaggactgaccgacaagccaggcagagtgaaactgctgccgccggccatactc
cgacctcagcaactgtggacaggaaagcaggtggtgtctacgctgctgctgaatgtcatc
ccagagaaagctgtgcctctcaacctggttggcaaatccaagatccccagcaaggcgtgg
atccaagtcccgccacgtgccgctccgggatacagacccgacagcatgtgtgactcgcag
gtgttgattcgtcagggggaactgctggtgggcgttctggacaaagctcactacggctcc
tcagcctatggtctggtccactgctgctatgagctgtacggagggcagaccagtggcaaa
ctgctcagctgtctggctcgcctcttcactgcctacctgcagctgtacagaggcttcact
ctgggtgtggaggacatcctggtgaaaccaggcgccaacaagcgaaggaaaaaaattatt
caagaatcgctacacattggcaccaaggccctcaaggcagccttcaacctgcccgccaac
atggatcaagctgaggctcagggccgctggcaggacgctcacctcaacccagaccagagg
gacttcagcatggccgaccacaagttcaaagaagtggccagccaagtaaacaatgacatc
aacaaggtgtgtatgcctatcggtctccacacctctttcccagacaacaaccttcagctg
atggtccagtcaggagccaaagggtctactgttaacaccatgcagatttcctgtctacta
ggccagatcgagttggagggccgcaggcctccactgatgccctctgggaaattcttgcca
tgtttccaaccatacgaccccgcaccgggtgccgggggcttcgtctctggaagattcctc
acgggcatcaaaccccaggagtttttcttccactgcatggctggccgagagggactggtc
gacacagccgtgaaaacctctcgatcaggatacctgcagagatgtgtcataaagcatctg
gagggcttggtagtgcagtacgatctgacggtgagggacagcgatggctccgtggtccag
ttcctgtacggcgaagatgggctggacatccccaagactcagttcctgcagcccagacag
ttccacttcatcgaggacaactatgaggtcatccagaggtcccagggcctcgacaagatc
atggcacgtttggaccctcaggctgccagtcaacactttgcagcaatccagcgctggaat
gcaaagcgagaggtggcatgtccacggagaggagcgttcctgttgttttcccaaaagaag
ttggccaaactcaaacagactacacttgagcttgcaaatcagtggtactccctggatgaa
gccagcagatcgaaatacagcaggaagacctcccgctgccccgagccctctctgagctcg
ctgaggccagacgtctgcttcggatctgtgtctgaaaacttccacggcatctccgagaaa
tatctgcaggacagaggcgcgacgggtcaagaccgagttgatacccacagccttcgccag
ctgctgctctataaatggcagcgttcactgtgtgacccgggtgaagcggttggcctgctg
gccgctcagtccataggcgagccctccacccagatgaccctcaacaccttccactttgca
ggcagaggagagatgaacgtcacactgggaatacctcgactaagagagatcctaatggtg
gccagctccaacattaaaactccgatgatgagcgttccagtactcaacaacaagaaagcc
ctgaagagggccaagacgctgcggaagaaactcaccagggtgtgtctggctgaggtcctg
cagaaattggatgtggtggagtcacttcaggtcgaaaaccaccaaaagcagcggcggttc
aaagtggccttccacttcctgtctcctgaccgttactgtgaagataagctgctaacgccc
caacagatcctctactacatggaaacaaggtttttccgtcttctcctcgaagccattaag
aagcgcagtgccaagctggcctccatcgccgtggagacgaggaaggccacaccaagagac
aaagacaatgatggcgatggagaggctgacacggcagggttagacgatggggatggggaa
gagagagagatcgttgatgaccaggggaacgaaggagacgccgatgcttcagacgccaag
agaaaaggcaaacaggaagaggaggtggactatgacagcgaggaggaggagggaggcgac
gacgacagtgaagataaagacgatgcagcgcaggaagaggtggagaaaagggaggagacg
attcaggaagactcccagacagagtttgcggtagtgagaccggagaagaagaaaaggaaa
caagcaaaaggaggagcaggagaagaagagaccatgagtcagatgagagtcaacgctgtt
ctgcagtcccacccggcgatagagagatactgctatgatcatcagcatgaactctggtgt
gaggtggacctgcttttacccgtcagcaaagtgcacttcgacctgacctcggtcctgtcg
acgctggcccagaacgcggtaatcgtggaaaccaagggcctgacgcgctgtctgctgagc
gaagccacaacaaaggctggagaaaaagagacggttctcaacacagagggcatcaacatg
cacgaactgttcaagcacagtgacatcttggacatcaacagactgtactccaacgaggtc
cacgccatggctaatacctacgggattgaagttgctctgaaggtcatagagaaggagatc
aaagatgtctttgctgtttatggtatcgaggtcgaccccagacatctgtctctggtggcg
gactacatgtgttttgaaggcgtatataagcccctaaaccggcacgccatccgatccaac
tcttcccctctacagcagatgaccttcgagaccagttataagttcctcaaacaggcgacc
atgctggggtcacacgatcagctggtgtcgccctcagcctgcctggtggtggggaaggta
gtcaaaggcggaacaggactgtttgagctgaaacaaccgctgcagtag
DBGET
integrated database retrieval system
