Scophthalmus maximus (turbot): 118319447
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Entry
118319447 CDS
T09850
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smau03041
]
118319447 (si:ch211-114c17.1)
Spliceosome [BR:
smau03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
118319447 (si:ch211-114c17.1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
TPR_16
TPR_2
TPR_11
UTP6_C
TPR_MalT
HrpB1_HrpK
TPR_21
HAT
Iml2-TPR_39
Motif
Other DBs
NCBI-GeneID:
118319447
NCBI-ProteinID:
XP_035505733
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All DBs
Position
9:complement(15141344..15148141)
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AA seq
727 aa
AA seq
DB search
MAAEGGEELSGNGELEVSSAMESSEVPPPPPIEMAEMLEENGSPAAAPEAPVDPDPSSFS
MPLVAEDEEGELPADFERLWKAAHDNPQDFTSWTDLLQYCEQESHMTASRRALVAFLIRY
PLCYGYWKKFADLERRAGYNDKAEEVCVQGLQAIPLSVDLWIHYVNLLLGTLDMNLPESP
KRIRRVFEDAVAAAGLDFHSDRLWDLYVEWEKEQGNMQNATAVLDRVLKVPTQLYNTHYD
KFKEHLNSHEPKEVLPPEEYEELRTLCRQSQKAERAEQAQEEVEERPPGEEQPATPEGTD
SEELMQKIREQVLVRRDKVYQDNEGEVRQRWNFEDAIKRPYFHVKSLDRLQLRSWHSYLD
WEVAQLNKDTKEPDQDLDQAATEGSEVTAQPHGVSEEVAVARDDHSVRILFERCLIACAL
YEEFWTRYIQYLEPQSVDEARAVYRRACEVHLTYKPNIHMQWATFEERHGDLTEARRVLE
ALEKNLPGLAVVRLRRAALERRAGNLDQSEALLQEAVAASKEKPTLHAFYSIKLARLLLK
LGRDPSRARRVLQEALEISPDNDKLHVNLLELEVSGDPWASAEAVQECVTRALAAPLAPH
TKILFSQRGLQFAEDYSNSIQSVLSVYEEHQKLLREHGGTKREAENGDEDSEKLSKSEDG
SAVAVSGQVPPTMPHVPITTPPPPVTGTDASAQAGYGGYGNWYQQSQYGGYGYQNTWNYN
QGYYPPS
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaaggcggtgaggagttgagcggcaacggggagctcgaagtgtcttcagcc
atggagtcctctgaggttcctccaccgcctccaattgagatggctgagatgttggaagag
aacggcagtcccgccgctgcccctgaagctcctgtggaccccgacccatcttccttctcc
atgcctctggttgcagaggacgaggagggggagctgcctgctgactttgagcgcctgtgg
aaggctgcccatgacaaccctcaagacttcaccagctggaccgacctgctacaatactgc
gagcaagagagtcacatgacagcgtcacgcagagcgctggtggccttcctcattcgttac
ccgctctgttacggctactggaagaaatttgctgatctggagcgccgcgcaggctacaac
gacaaagcagaggaggtgtgtgtccagggtctccaggcaatccctctgagtgtagatctg
tggatccactacgtcaatctgttgctgggaacattggacatgaacctgcccgagtcgcca
aagaggattcgccgtgtgtttgaggatgcggttgcggcagcaggtctggacttccactca
gaccgcctttgggatctgtatgttgagtgggagaaggaacaggggaacatgcagaacgcg
accgccgtcctcgacagagtcctcaaagtccccactcaactctacaacacccactatgac
aagttcaaggagcacctgaacagccatgagcccaaagaggtgcttcccccggaggagtac
gaggagctgaggacgttgtgccgtcagagccagaaggcagagcgtgccgaacaggcccag
gaggaggtggaggagaggccgccgggcgaggaacagccagccacacctgagggcacagat
tcagaggagctgatgcagaagatccgggaacaagtcctggttcgcagggataaagtttat
caggacaacgagggagaagtccgccagagatggaactttgaagatgctatcaagcggccc
tacttccacgtcaagtcactggaccgcctgcagctgcgatcctggcactcttacctggac
tgggaggtcgctcagctgaacaaggacaccaaagaacccgaccaagatctggaccaggca
gccacagaggggtcagaggtcacagctcagccccatggagtgtcagaggaggtggcggtt
gcccgtgatgaccacagtgttcgcatcctctttgagcgttgcttgatcgcttgcgctctg
tatgaggagttttggaccagatacattcagtacctggagccgcagagtgtggacgaggct
cgagcggtttacagacgagcctgtgaggtccacctgacttacaaacccaacatccacatg
cagtgggccaccttcgaggagaggcacggtgatttaaccgaggctcggcgagtgctggag
gcactggagaagaatctgccggggctggcagtggtccgtctccgccgggcggctctggag
agacgagcgggcaacctggaccaatcagaggccttgctgcaggaggcggtggctgcatcc
aaagagaagcccacgttgcacgcgttctactccatcaagctggctcgcctgctgctgaaa
ctgggcagggacccgagcagagcgcgcagagttttacaggaggcgctggagatcagtccg
gacaacgataaactgcatgtgaacctgttggagctggaggtgtcaggggacccctgggcc
tcagcggaggcggtgcaggagtgtgtgacacgagctctggcagctcctctcgctccacac
accaagatcctgttctcacagagaggcctgcagtttgccgaggactacagcaactccatc
cagagcgtgctgtctgtctacgaggagcaccagaaactgttgagggagcacggtggaaca
aagagagaagcagaaaacggtgacgaggattcagagaaactcagcaaaagcgaggacggc
tctgctgttgccgtgtccgggcaagtcccacccaccatgccgcatgtccccatcacaacg
ccccctcctcctgtgacgggcaccgacgcgagcgcgcaggccggctacggaggatacggc
aactggtaccagcaatcacagtacggtggctacggctaccagaacacctggaactacaac
cagggctactatccccccagctaa
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