Scophthalmus maximus (turbot): 118319603
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Entry
118319603 CDS
T09850
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03020
RNA polymerase
smau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118319603 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
118319603 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118319603 (polr2b)
03400 DNA repair and recombination proteins [BR:
smau03400
]
118319603 (polr2b)
Enzymes [BR:
smau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118319603 (polr2b)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118319603 (polr2b)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118319603 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
118319603
NCBI-ProteinID:
XP_035506005
UniProt:
A0A8D3CMZ6
LinkDB
All DBs
Position
9:24049042..24064334
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRLPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaggacgaagataatcaatatgatgaagatgaggatgaaatcactccggac
ttgtggcaggaggcgtgttggatcgtcatcagctcttatttcgacgagaagggtctcgtg
cgtcagcagctggactcgttcgatgagttcattcagatgtcggttcagaggatcgtggaa
gatgctccgcccatcgacctgcaggctgaagcccagcacacgtcaggggaggtggaggag
ccgcctcgttacctactgaagtttgagcagatctacttgtcgaagcccacacactgggag
agagatggagctccttctcccatgatgcccaacgaagctcgactacgaaatctcacttac
tccgctcccttgtacgttgacatcaccaagaccataataaaggagggggaggaccagctg
cagacacaacaccagaaaaccttcatcggaaagattcccatcatgcttcgttccacctac
tgcctgctgagtggcctgacagatcgagacctgtgcgagctcaacgagtgtccgctcgac
cccggaggttatttcatcatcaacggctcagagaaggtgctgatcgctcaggagaagatg
gccaccaacacagtgtacgtctttgctaagaaggactcaaagtacgcctacaccgcagag
tgtcggtcatgcctggagaactcctcccgtcccaccagcaccatctgggtcagcatgatg
gcccgaggaggacagggagtgaagaagagtgcgattggtcagaggatcgtatccacgctg
ccgtacatcagacaggaagttcccatcatcatcgtgtttcgagcgctgggattcgtgtca
gacagagacatcctggaacacatcatctacgacttcgatgacccagagatgatggagatg
gttaagccgtctctcgatgaagcgtttgtgatccaggagcagaacgtggcattgaacttt
attggttccagaggagcgaaaccaggagtgacgaaagaaagaagaatcaaatacgcaaaa
gaagttttgcagaaagaaatgctgccgcatgtcggagtcagcgacttctgtgagaccaag
aaggcgtatttcttagggtacatggtccacaggttgctgctcgctgctcttggcagacgc
gagctcgacgacagggatcactatggcaacaagaggctggacctcgccgggccgcttttg
gctttcctgttcagaggcatgtttaagaacctgctgaaggaaatcaggatttacgctcag
aagttcatcgacagaggaaaagactttaatctggagctcgccattaaaaccagaatcatc
tcagatggactcaaatactcactggccactggaaactggggcgacgtgaagaaggctcat
caggcccgagctggagtgtcacaggtgttgaaccgtttgacttttgcgtccactctgtcc
cacctccggcgagtcaactctccgatcggcagagacggcaaactggcaaaacccagacaa
ctgcacaacacgctgtgggggatggtttgtccggccgagacgcccgagggtcacgctgtg
ggtctggtgaagaacttggccctcatggcctacatctccgtgggctctcagccgtctccc
atcctggagtttctggaggaatggagtatggagaacctggaggagatctcacccgctgcc
attgcagatgccactaaaatctttgtgaacggctgctgggtcggaatccacaaagatccc
gaacagctgatgaacacactgaggaaactccgcagacagatggacatcatcgtgtctgag
gtgtcgatgatcagagacatcagagaacgtgagatacgaatttacacagatgctggacga
atctgccgtccgctgctgatcgtcgagaaacaaaaactcctgctgaagagacgacacatc
gaccagctgaaggaaagagagtacaacaactacagctggcaggacttggtggcgagcggt
gtggttgagtacatcgacacgctggaggaagagaccgtgatgctcgctatgacccctgac
gacctccaggagaagggcgtggcctactgttctacctacacccactgtgagattcacccg
tccatgatccttggagtttgtgcttccatcatccccttccccgaccacaaccagtctccc
aggaacacgtaccagtctgcgatgggtaaacaggccatgggcgtgtacatcaccaacttc
cacgtacgaatggacacgctggctcacgtcttgtactaccctcagaaaccgctggtcacc
accagatccatggagtacctgcgcttcagagagcttcctgcaggcatcaactccatcgtg
gcaattgcctcgtacacaggatacaaccaggaggactctgtgatcatgaacagatcggct
gtggatcgaggcttcttcaggtctgttttctatcgatcctacaaagagcaggagtcgaag
aaaggtttcgatcaggaggaaatctttgagaagccaacacgtgaaacctgtcagggtatg
agacatgcaatctacgacaagctagatgatgacggactgattgcacccggagttcgtgtg
tccggcgaggacgtgatcatcgggaagaccgtgacgctgccggaaaacgacgatgagtta
gacagcaccaaccggcgctacaccaagagggactgcagcactttcctcagaaccagtgag
accggcatcgtggaccaggtgatggtgactctgaatcaggagggatacaagttctgcaag
atcagggtccgttcggtccgaattcctcagatcggagataagttcgccagccgccacgga
cagaaaggaacctgtgggatccagtacagacaggaggacatgccgttcacctgtgaggga
atcacacctgacatcatcatcaatcctcacgccatcccgtccagaatgaccgttggccat
ctgatcgagtgtctgcagggcaaggtgtcggcgaacaaaggtgagatcggtgacgcgacg
ccgtttaacgacgccgttaacgttcagaaggtgtcgaacctgctgtcggagtacggatac
cacctgagaggaaatgaggttctgtataacggcttcactgggaggaagctgacgtctcag
atcttcgtcggtccgacgtattaccagcgtctgaagcacatggtcgacgacaagatccac
tcgagggcccgaggcccagttcagatcctcaacaggcaaccgatggagggacgctcgcgt
gatggcggtctgcggttcggagagatggagcgtgattgtcagatcgctcacggagccgct
caattcctcagagaacgtctgttcgaggcgtccgatccatatcaggtccacgtttgtaac
ctgtgcggactaatggcgattgccaacacacggacgcacacgtacgagtgtcgaggctgc
cgtaacaagacacagatctctctggtccggttgccgtacgcctgtaaacttctcttccag
gagttgatgtcgatgagcatcgcccctcgaatgatgacatcatag
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integrated database retrieval system
