Scophthalmus maximus (turbot): 118319730
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Entry
118319730 CDS
T09850
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03273
Virion - Lassa virus and SFTS virus
smau04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118319730 (pcdh11)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
118319730 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smau01009
]
118319730 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smau04515
]
118319730 (pcdh11)
Protein phosphatases and associated proteins [BR:
smau01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118319730 (pcdh11)
Cell adhesion molecules [BR:
smau04515
]
Cadherins
Protocadherins
118319730 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
118319730
NCBI-ProteinID:
XP_035506210
UniProt:
A0A8D3B8K2
LinkDB
All DBs
Position
9:complement(14387056..14510226)
Genome browser
AA seq
1265 aa
AA seq
DB search
MDLASQAHVLAVLLTCVVLLCRAQERDYTVKEEQPENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPVFKDSELEVTVPENAPMGTSVSQLHATDADLGSNAQIHFAFSNQISASTKRHF
AIDSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVTVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYTLGPDAPDGFNVDRRSGILSVGKRLDREKQERYSFTV
IARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVITLSILNGKDNFIIDPQTGVIRPNITFDREQQSSYTFMVKAVDGGHPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGAVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFAIDKTTGNITLQEKIVAADQGLHRLVVKVKDLGQPASLNAIALIHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKPDDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTAGQITTRQNPGQ
TPEKSFHSPPPICPHKDACQLSKITSVNTQRRVTFHLPDGSQESCSDSGLGDPELSSTAS
TTQPLPLSFPQEEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGH
SDSCWMPPALAQFQGPGSNSPTSATTITGTLPVFGFQQSCARGAKANMGSMGVMDGRHTL
GRSVPKRDELDKGINRPQFYNTLDRHCSSKKEDPVKVIPLASFSSPGQQMPTGYGSSSFL
HEHQL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggacttggcaagtcaagctcatgtgctggcagtcttgctcacctgtgtggtcttgcta
tgccgggcccaggagagggactatacagtgaaggaggagcagccagaaaacgtccgaatc
ggcaacctgcggaaggacctggacctcaacctagaccccaacatcaggctgtcctcgcca
ctgcagttcaagcctgtatacaagacaggtgatgtgcctttggttagagtggaggccaac
actggggagatctttaccaccaatcacagaatcgaccgggagaagctatgttcaggggtc
ttcgctgagaaacgctgctactatgagatcgaggtggccgtgctgcctgatgagatcttc
cgattggtcaagatccgcttcctgatcgaggacgtgaatgacaacgcaccgcttttccag
tctactgtaataaacatctcaattcctgagaacacagcaatcaacacccgatacccggtg
ccctctgcatttgaccctgatgtaggaatcaatgggatccaacattatgaactggtcaag
agtgtcagcgagtttggcttggacatcattgagactcccgaaggtgacaagtggccacag
cttatcgtacagcagaacctggatcgagagcagaaggacacctttgtcatgaaaataaag
gtggaagacggtggcaaccctccaaagtcaagcactgccattctccaagtcaccatttct
gatgtcaatgacaatcgtcctgtcttcaaagacagtgagctggaggtcacagtaccagag
aatgccccaatgggaacatcagtttctcagcttcatgccacggatgcagacctgggttct
aatgcacagatccactttgccttcagcaaccagatctctgcctcgaccaaacgtcatttt
gccattgacagctctacaggactgataactgtgaagcagccgctggacagggaggtaact
cctgtccataaactcatcgtcctggccagcgatgggagctccaccccctccagagccaca
gtgactgtcaatgtaacagacgttaatgacaatgttccctccatagacactcgctacatt
atcaacctggttaatgggactgttctattgtctgagaatgctcctctcaacaccaaaata
gccctaattacggttactgacaaggatgcagatctctatggcaaagtagcttgctacact
gaccatgatgttccattccggttgaagcctgtctttaatgatcagtttttactagagaca
gctgcccccctagattatgagacgacgcgagaatatgcaattaagatagtggcttcggat
agggggacgcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaat
gacaatgcacccattttcccccagccagaaatccaactttccataccggagaacaatgac
ccctctacacagttaataaaaataagtgccactgatgcagacagtggacataatgctgag
attatttatactcttggcccggatgcacctgatgggtttaacgtagacagacggtcagga
atcctttctgttggcaaacgactggacagagagaagcaggaaaggtactcattcactgtc
atagcgagggacaatggctccacatccctacagagcaatgtcactgtcaggctaattgtc
caggaccttaatgacaacagcccagctttcacacaccctgaatacaacttctatgtgcct
gagaacctgcctctctatggaactgtgggcttaatcacagtgacggatgcagatgctgga
gataatgctgttataaccctgtcgattttgaatgggaaagataatttcatcatcgaccct
caaactggtgtgatcagacccaatatcacctttgatagggagcagcaaagctcctacaca
tttatggtcaaggcagttgatggagggcatcccccaagttcctcctatgccaaggtcact
atcaatgttgtcgacgtaaatgacaatcgccctgtgtttgtcatcccatcatcgaattac
tcgtatgacctagtgcgaaccaccaccacccctggtgctgtggtcaccagagtgtttgcc
attgacaatgacacaggtatgaatgctgagctgcagtacagtattatcagcagcatcatc
atcacatctcgggtctctcctagaggtctctttgccatcgacaaaacaacgggtaacata
acactacaggagaaaatagtggcagctgatcaggggctgcataggcttgtagtcaaggtg
aaagatctaggccaacctgcatcattaaatgccatagcacttattcacttgtttgtcaat
gacactgtgtcaaatgctacctttattcaagagcagctgagaaaaagtatggagacaccc
ttggaccgtaacataggagacagtgaggtaacacctcaagccaatggatatgtgattgtt
gtcatagccatcatagcaggaaccatgactgttatcttggtgatatttgtgaccgcgttg
gtgcgctgccggcagacacccagacacaaagtggtgcagaagggcaagcagagtggtgag
tgggtgtcgcccaaccaagagaaccgtcagatcaagaagaagaagaagagaaagaagcga
tcccccaagagcctcctcctgaactttgtgaccatagatgaatccaagcctgatgaccct
acccatgagcatgttaatggtacactggatctccctgtggagctagaggagcaaaccatg
gggaagtacaattgggctacgacgcccaccaccttcaaaccagacagcccagatttagcc
aagcattacaagtcagcgtcccctcaacctacatttcaaatcaaaccggagactccagtg
gccccaaagaaacaccatgtgatccaggaactccccttggacaacacattcgtggtgggc
tgtgactcgctctccaagtgctcatcgactagctccgacccatacagtgtctcagagtgc
agctgtcaggggggattcaagactgcggggcaaatcaccactcgacagaatccaggccag
acaccggagaagtcctttcactcaccgccccccatttgtcctcataaggatgcctgtcag
ctcagcaagataacctccgtcaatacccagcgtcgcgtgacgttccatcttccagacggt
tcccaggagagttgcagcgatagcgggctgggagacccagagctgagcagcacggccagc
accacgcagcctcttcccctcagcttcccccaggaggagtactatgagcaaacatcacct
aacagccgcactgagggagatggaaactcagaccctgaatccaccatcgaggtgaacctg
cagaaagccttggctgaggcctctgagacctgtacccaggagtgtctgatactgggccac
tcggacagctgctggatgcctccagccctggcccagttccagggtcctggcagcaacagt
cccacctctgccacaaccatcactggtaccctccccgtgtttggcttccagcagagctgt
gcccgaggagccaaagctaacatgggcagcatgggggtcatggatggccgccataccctg
ggtaggtctgttcccaaaagagatgaactggacaaagggatcaaccgaccccagttctac
aacaccctggacagacactgcagtagtaagaaggaagaccctgtcaaggtcatacccctc
gcaagcttttcctcccccggtcagcagatgcccaccggttatggcagcagctctttctta
cacgagcaccagttgtaa
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integrated database retrieval system
