Scophthalmus maximus (turbot): 118319748
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Entry
118319748 CDS
T09850
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b isoform X1
KO
K16499
protocadherin delta 2
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smau04515
]
118319748 (pcdh18b)
Cell adhesion molecules [BR:
smau04515
]
Cadherins
Protocadherins
118319748 (pcdh18b)
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
TMEM154
Motif
Other DBs
NCBI-GeneID:
118319748
NCBI-ProteinID:
XP_035506237
EnsemblRapid:
ENSSMAG00025001696
LinkDB
All DBs
Position
9:complement(1312105..1322066)
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AA seq
1250 aa
AA seq
DB search
MEVSARVCAKKMGAKMVQAKGNIFSPALLQLLLLVALIHGAAGKTLKYKVFEEQKVGTVI
ARLREDVAGVLSKLPSSLNFRFRAMQRGSTPLLSVREEDGEISIGTKIDREKLCEKNLNC
SIEFDVVTLPTEYLQLFHVEVEVLDINDNSPHFSRAIVPIEISESASVGTRVPLDGAVDA
DVGDNSLHTYTLTPNNFFKIDVRTRTDGAKYAELVVMRELDREVLSSYQLQLTASDNGVP
PKSGSTLLKIIISDSNDNSPAFDEQAYIINLLENSPLGTLIIDLNATDPDEGTNGKIVYS
FSSHVSPKILETFKINPETGHITLIKKVDFETTASYELDVQAQDMGPNSIPGLCKIVVKV
VDVNDNKPEININLMTPGKEEVAYISEGAPVDTFIALVRVDDSDAGLNGEVVCRLHGHGH
FRLQKTHEKNYMILTNISLDREKRSEYSLTVIAEDRGSPSLSTIKHFTVQVLDENDNPPR
FEKSHYEVFKSENNSPGAYLMTVVASDPDLGTNGQVTYNIIDAVVQGSPISTYVTIDPSN
GAIYALRSFDHEDVSRVAFIIQARDGGNPSLSANTTVLLTVLDENDNPPVIHSPPIQNHT
AELLVWKYASPGQLITALKVTDRDAGANGELSCAIVGGNEDRLFVMDARRCELRTNATLE
QAPRDVMELKVEVQDRGTSRLSTGALLRLSLQENMDILPPLYPTGTSQASLDLSLIVIIS
LGAVCALLLIVMVMFATTRCSREKKDPRHNYNCRVAESSYQNHPKKPTRQIHKADITLVP
TVNGTLPVRAHPRSPSASPTPERGTLGSRQSHHSRQSLSSLVTISSNHVPENFALELAHA
TPPVEQVSQLLSMLHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSD
YEPGRESPMDRLLGEGFIEIYAPDGQHRTHAAMRLCTEECRVLGHSDQCWMPPLASPASS
SSDYRSNLYIPGEEARQVTDHSQEKTPQPCTDTGTARNQSFSTFGKDLGAEDGGEEEGGE
DGGGEAREEDLCGTTSLLSEMSSVFQRLLPQGLDSYVQVNEKEKGTSLSGVGVPMTGSLD
RRRGHLPGKPSPSVHQQGVAAWAANTHFQNPGSSIGPSGHHQGGSYHTLKPSTKLGSQSS
SHKGSQAPKNSPQNSGHPPKPHSSPLLTALVSPTLMQHSPAPVPVPVPLPGPSSKWLPAM
EEIPENYEEDDFDSVLGHLQGKRSDSRHELVDASELVAEINKLLQDVRQS
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaagcgccagagtgtgcgcaaagaagatgggggcaaaaatggtccaagccaaa
ggaaatattttctctccggcactgctccagctattgcttttggtcgcgctcatacacgga
gccgctggcaagactttgaaatataaagttttcgaggagcagaaagtgggcacggttatt
gcgcggttgcgggaggatgtcgccggggttttgtccaaactaccgagttcgctgaacttt
cggttccgcgcgatgcaacgggggagcacgccgctcttgtctgtccgggaggaggacggg
gagatcagcattggcaccaagatcgaccgcgagaagctctgtgagaaaaacttgaactgc
tcgattgaattcgacgtggtcacgctgccgacagaatacctgcagctgttccatgtggag
gtggaagtgctggatatcaacgacaactccccgcacttctcccgcgccattgtccccatt
gagatttccgagagcgcatccgtggggacgcgagtcccgctggatggcgcagtggacgca
gatgtcggagacaattccctgcacacttacactctgacacccaataacttctttaagatc
gatgtgaggaccaggacggacggggccaagtacgcggagctggtggtgatgagggagctg
gaccgggaggtcctgtccagctaccagctgcagctcacagcctcggacaacggtgtgccc
cccaagtctggctccactttgctcaaaatcatcatttccgattccaatgacaacagcccg
gcctttgatgagcaggcctacatcatcaatttgctggagaactctcccctcgggactcta
atcattgatttgaacgccacagatccagatgagggcactaatgggaaaatagtctactcg
ttcagcagccacgtttctccgaagatcttggaaacatttaagataaacccagaaactggc
cacatcactcttattaagaaagttgactttgaaaccacagcttcctatgagctggatgtg
caggctcaggacatgggcccaaactccatccctggactttgtaaaattgtggtgaaagtg
gtggatgtaaatgacaacaaaccagagataaacatcaacctgatgacgcctggcaaagaa
gaagtggcctatatttccgagggggcgcccgtggacaccttcatagctctggtgcgtgtt
gatgacagcgacgcaggcctcaacggtgaggtggtgtgcaggcttcacggccacggccac
ttcagactccagaagacccacgagaagaactacatgatcctcaccaacatctcgttggac
agggagaagaggtcagagtacagtctgacggtcatagctgaggacaggggttctcccagc
ctctccaccatcaaacatttcactgttcaggtgctggacgaaaatgacaaccccccacgc
tttgagaagagccactatgaggtatttaaatcagaaaacaactccccgggagcctatctg
atgactgtggtggcctcagatccagatctgggaaccaatggccaggtcacctacaacatc
atagacgccgtggtccaagggagccccatctccacctacgtcaccattgatccctctaat
ggcgccatctatgccttgcgcagctttgaccacgaagacgtcagccgggtggctttcatc
atccaggcacgcgatggcggaaacccgtcactgtcagcaaacaccactgtccttctaact
gttttggatgaaaacgacaacccgcctgtcattcactcgccccccatccagaaccacact
gctgagcttctggtgtggaagtatgcgtctcctggtcagctgataactgcgctcaaagtc
acagaccgcgacgctggtgccaatggagagctgagctgcgccatcgttggaggcaatgag
gacaggctgtttgtcatggatgcccggcgatgtgagctcagaaccaatgccactctggaa
caggctcctcgggacgtgatggagctcaaggtagaagtgcaagacagaggcaccagtcgg
ctgtccacaggggccctcctcaggctctccctgcaggagaacatggacatcctcccccct
ctctaccccactggcaccagccaagcctcactggatctctccctcattgtcatcatctct
ctgggtgccgtttgtgctctcttgctcatcgttatggtgatgtttgccaccacccgctgc
agccgcgagaagaaagaccccagacacaactacaactgtcgtgtggcagaaagcagctac
cagaaccaccccaaaaagcccaccaggcagatccacaaggcagacatcaccctggtccca
actgtcaacgggactctgcccgtccgggcacacccgcgctcgccgtcagcctccccgaca
ccggagaggggcaccctggggagcagacagagccaccatagccgccagtccctcagcagc
ctggtcaccatctcctccaatcatgtaccagagaattttgccctggagcttgcccacgcc
acacctcctgtagagcaagtctcacagcttctgtccatgctccatcagggccagtaccag
ccacgaccaagcttcagaggcaacaaatataccaggagttacagatatgccttgaatgag
atggacaagttcagtctgaaggacagcggccgcggggacagcgaggctggggacagcgac
tacgagcctggcagggagtcacccatggataggctccttggtgagggctttattgagata
tatgcccctgatggtcagcacagaacgcatgcagctatgaggctctgcacagaggagtgt
cgtgtcctgggccactcagatcagtgctggatgccccccctggcctccccggcctcgtcc
tcctccgactaccgaagcaacctatacatcccaggggaagaagcgcgccaggtgacggac
cactcgcaggaaaagaccccacagccctgcactgacacagggaccgcccgcaaccagagc
ttctccaccttcggcaaggacctgggcgctgaggacgggggagaagaggaggggggagag
gacggtgggggtgaggccagagaggaagacctgtgcgggaccacgtcactgttgtcagag
atgagcagtgtgttccagaggttgctaccccaggggctggactcctacgtccaggtcaac
gagaaagagaaagggaccagcctgagcggggtgggtgtacccatgactggatctttagat
cgcaggaggggccatctgcccggcaagccgagcccctccgtccaccagcagggcgtggca
gcctgggctgccaacacccactttcagaacccaggaagcagcattggcccgtctggccat
caccagggcggcagctaccacaccttgaaacccagcaccaagctcggctcccagagcagc
agccacaagggctcgcaggcacccaagaacagccctcagaacagcggccacccccctaaa
ccccacagcagccccctgctcactgcactggtcagccccactctgatgcagcattcccca
gcccccgtgccagtaccagtgccactcccgggaccctcctccaagtggctgcctgccatg
gaggagatccccgagaattacgaggaggacgatttcgactcggtgctcggccaccttcag
ggcaaacgcagcgacagccgacacgaactggtggacgccagcgagctggtggctgaaatc
aacaaactcttacaggatgtccggcagagttag
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