Scophthalmus maximus (turbot): 118319834
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Entry
118319834 CDS
T09850
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04010
MAPK signaling pathway
smau04210
Apoptosis
smau04218
Cellular senescence
smau04620
Toll-like receptor signaling pathway
smau04621
NOD-like receptor signaling pathway
smau04622
RIG-I-like receptor signaling pathway
smau04623
Cytosolic DNA-sensing pathway
smau04625
C-type lectin receptor signaling pathway
smau04920
Adipocytokine signaling pathway
smau05132
Salmonella infection
smau05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118319834 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
118319834 (nfkb1)
04218 Cellular senescence
118319834 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
118319834 (nfkb1)
04621 NOD-like receptor signaling pathway
118319834 (nfkb1)
04622 RIG-I-like receptor signaling pathway
118319834 (nfkb1)
04623 Cytosolic DNA-sensing pathway
118319834 (nfkb1)
04625 C-type lectin receptor signaling pathway
118319834 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
118319834 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118319834 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
118319834 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smau03000
]
118319834 (nfkb1)
Transcription factors [BR:
smau03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
118319834 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Ank_KRIT1
Motif
Other DBs
NCBI-GeneID:
118319834
NCBI-ProteinID:
XP_035506409
LinkDB
All DBs
Position
9:complement(24579410..24595983)
Genome browser
AA seq
930 aa
AA seq
DB search
MAGDEHYLHTNNQIFDNIMNDQLWEFPHFPVVSQTTSGRTGDGPYLQILEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKTYPTVKVSNYQGPARVVVQLVTALTPLPQLHAHSLVGKQ
CDKGICIADLLPKDSNISFPNLGILHVTKKNVVKTLEERMSEAVRMGHNCGVFIHPEIDA
LQGEVRVPRELHEHQRSAISSAASLQAKEMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSGVTWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQRPTSVFVQLKRKSDNESSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFHDFSGHGGGGGGGGGGGLYRGGGGGGGPAAGGGGGGAPGSVGGGGYY
QGFTTYNYGGGGGFSTGYSAGVGGGGGGGGGIKHASGSDAGDEESGSGAAPRAPAQTGGM
EVGEGAEEGGVRVEPEPGEQWVQVTSRQLDSLFQYSVTGDPVYLLAPQRPLMTAQDEDGD
TGLHLAVLHSQQEALKSLTQVVSALPGEEVLNMRNHLYQTPLHLAVITQQKEAVEALLRA
GADPTLTDRHGNTALHLASQQEEGGGMIQLLLQHRELRGLLENNNTAGLCAIHLAVLANR
LCSLRELLEGGANVEAQERGSGRTALHLATETDNVSLAGCLLLEGNASVDCCTFNGSTPL
HVAVGRGSVKLTALLMAAGADPQKQNFEPLFFREEEEKEDEEDEGYIPGTTPLNMAATSQ
VLELLNGKEYEPKSPHRVVRPPQGDLASLDVEVKQEVCRALESEGCWETLAHSLGLGILN
TAFRLSPSPAKTLLDSYEVSGGTVSDLLAALRSAGEGGALSVLEEALHLSDGAETPPPTV
ECLGAPVHDLKMETRIDSGVCDSGVELSTA
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggctggagacgagcattaccttcacacgaacaaccagatcttcgacaacatcatgaac
gaccagttgtgggagttcccacattttcctgtcgtgtctcagacgacgtctgggagaact
ggtgacgggccgtacctgcagatcctggagcagccgaagcagcgaggcttcaggttcagg
tacggttgtgaaggtccgtctcacggcggcctgcccggagcgtccagcgagaagaacagg
aagacctaccccaccgtcaaggtcagtaactaccagggtccagcccgtgtggtggtccag
ctggtgacggcgctcacccccctccctcagcttcacgctcacagtctggtggggaaacag
tgtgacaaagggatctgcatcgccgacctgctgcccaaagactccaacatcagtttccca
aacctggggattctccatgtgacgaagaagaacgtggtgaagactctggaggagcggatg
agcgaggccgtcagaatgggccacaactgtggcgtgttcatccaccccgagatcgacgcc
ctgcagggggaggtccgggtcccccgagagctgcacgagcaccagcgcagtgcgatcagc
agcgcggcgtctctccaggctaaagagatggatctcagcgtggtgcggctcatgttcacc
gcgttcctccccgacagcgacggaggtttctccaggcgtctcgagcccgtcgtgtccgag
ccgatctacgacagcaaggctccgaacgcctccaacctgaagatcgtgaggatggaccga
actgccggctgcgtgacgggcggagaggaggtttacctgctctgcgacaaagtccagaaa
gatgatattcaggttcggttctatgaagaagacgactcgggggtgacctgggaggctctg
ggtgatttctcaccgaccgacgtccacagacagttcgccatcgtcttcaagactcccaag
taccgggaccagaacctgcagaggcccacgtcagtgttcgtacagctgaagaggaagtct
gacaacgagagcagcgagcccaaacccttcacctaccacccgcagatcatagacaaggag
gaggtgcagaggaagaggcagaagacgttgcccaacttccacgacttcagtggtcatgga
ggagggggagggggaggagggggagggggtctgtaccgaggagggggaggaggaggagga
ccagcagcaggaggaggaggaggaggagccccgggctcagtcggaggaggaggttattac
cagggttttactacctacaactatggaggaggaggtggtttctccacaggatactcagcc
ggtgtgggaggaggaggaggaggaggaggaggcatcaaacacgcctctgggagcgacgca
ggagacgaagagtcggggtcgggggccgcaccgcgagctcctgcccagaccggaggcatg
gaggtcggggagggggccgaggagggaggggtcagagtggagccagaaccaggtgagcag
tgggttcaggtgaccagcagacagttggactctctctttcagtactctgtcactggtgac
ccggtgtacctgctggctccacagcgccccctgatgacagcacaggacgaggacggagac
accggactccacctggcggttctacacagccagcaggaggcgctgaagagtctgacccag
gtcgtgtctgctctgcctggagaggaagtgctaaacatgaggaaccacctgtaccagact
cctttgcacctggcagtgatcacgcagcagaaggaagctgtggaggcgctgctgcgggcc
ggcgccgacccgactttgacggatcgtcatggcaacactgcgcttcacctggcgtcacag
caggaagaaggaggagggatgatccaacttctactacaacacagagaactgagaggactg
ctggagaacaataacacagcaggtctgtgtgcgatccacctggccgtcctggccaatcgg
ctctgttctctcagggagctgctggagggcggggccaacgtggaggctcaggagcgtggc
tccgggcgaaccgccctgcacctcgccaccgagaccgacaacgtgtcgctggccggctgc
ctgctgctagagggaaacgcctcggtggactgctgcacctttaacggctccacccccctc
cacgtcgctgtggggcggggctccgtcaagctcaccgctctcctgatggcggcaggtgcc
gaccctcagaagcagaactttgagccgctcttcttcagagaggaggaggagaaggaggat
gaagaagatgaaggctacatcccaggaaccactcctctcaacatggctgccacctcgcag
gtgctggagcttctcaatggtaaagagtatgaaccgaaaagtcctcacagggtcgtcaga
cctccacaaggcgacctggcgagcctggatgtggaggtgaagcaggaagtgtgtcgtgct
ctggagagtgaaggatgctgggagacgctggcacacagtctgggtctcgggatcctcaac
acggccttcaggctgagcccctcccccgccaagacactgctggacagctacgaggtttcg
ggcgggacggtcagtgacctcttggctgctctgaggtcagcgggggagggcggagcgctg
agcgtcctggaggaggcgctgcatctctctgacggtgcggaaacgccgccgccgacagtc
gagtgtctgggagcaccggtccacgacctgaagatggaaactcggattgacagcggggtc
tgtgacagcggggtggagctgtccacagcctag
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